Construct: sgRNA BRDN0001147792
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- CTTGCGGTAGAAGACACGCA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- EPHB2 (2048)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77547
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000001.11 |
1 |
22784837 |
- |
EPHB2 |
NNNGCGGTAGAAGACACGCA |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000002.12 |
2 |
28332774 |
+ |
BABAM2 |
NNNGGGGCAGAAGACACGCA |
NGG |
2 |
0.6 |
Tier II |
| 3 |
NC_000009.12 |
9 |
129815111 |
- |
TOR1A |
NNNTCAGTAGAAGACACGCA |
NGG |
2 |
0.3636 |
Tier II |
| 4 |
NC_000011.10 |
11 |
61341368 |
- |
TKFC |
NNNGGGGTAGAAGACAGGCA |
NGG |
2 |
0.0353 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000077.6 |
11 |
59450416 |
- |
Jmjd4 |
NNNGCGCTAGAAAACACGCA |
NGG |
2 |
0.6346 |
Tier I |
| 2 |
NC_000077.6 |
11 |
115346387 |
- |
Otop3 |
NNNGCGGTAGAACACACCCA |
NGG |
2 |
0.2005 |
Tier I |
| 3 |
NC_000078.6 |
12 |
17324664 |
+ |
Atp6v1c2 |
NNNGCTGTAGAAGACACGCG |
NGG |
2 |
0.5098 |
Tier II |
| 4 |
NC_000071.6 |
5 |
75622172 |
+ |
Kit |
NNNGCCGTAGAAGACACGCA |
NGA |
2 |
0.0473 |
Tier II |
Other clones with same target sequence:
(none)
