Construct: sgRNA BRDN0001147832
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- CCTGGCTAAGATCTTCGAGC
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- COQ8A (56997)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77321
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000001.11 |
1 |
226982717 |
+ |
COQ8A |
NNNGGCTAAGATCTTCGAGC |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000009.12 |
9 |
125306793 |
- |
GAPVD1 |
NNNGTCTAAGATCTTGGAGC |
NGG |
2 |
0.0462 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000085.6 |
19 |
38069162 |
+ |
Cep55 |
NNNAGCAAAGATCTTCGAGC |
NGG |
2 |
0.7875 |
Tier I |
| 2 |
NC_000067.6 |
1 |
180170390 |
- |
Coq8a |
NNNGGCCAAGATCTTTGAGC |
NGG |
2 |
0.2115 |
Tier I |
| 3 |
NC_000068.7 |
2 |
75485091 |
- |
Gm50595 |
NNNGGCTAAGATCTCCGAGC |
NGC |
2 |
0.0061 |
Tier II |
| 4 |
NC_000073.6 |
7 |
25461017 |
+ |
4732471J01Rik |
NNNGGCTGAGATCTTCGAGC |
NGA |
2 |
0.0509 |
Tier III |
| 5 |
NC_000073.6 |
7 |
25515354 |
+ |
4732471J01Rik |
NNNGGCTGAGATCTTCGAGC |
NGA |
2 |
0.0509 |
Tier III |
| 6 |
NC_000068.7 |
2 |
33544150 |
- |
Gm33642 |
NNNGGATAAGATCTGCGAGC |
NGG |
2 |
0.0464 |
Tier III |
Other clones with same target sequence:
(none)
