Construct: sgRNA BRDN0001147882

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
TGTGAACAGAGGGATGTCAA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
PAPSS1 (9061)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
77612

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000004.12 4 107687080 - PAPSS1 NNNGAACAGAGGGATGTCAA NGG 0 1.0 Tier I
2 NC_000004.12 4 47264456 - GABRB1 NNNGAACAGAGGGATGTTAA NGG 1 0.6429 Tier II
3 NC_000017.11 17 42420696 + CAVIN1 NNNGAACAGAGGGATGCCAG NGG 2 0.5398 Tier II
4 NC_000009.12 9 130616017 + FUBP3 NNNGAACAGAGAGATGTAAA NGG 2 0.5026 Tier II
5 NC_000018.10 18 13436636 - LDLRAD4 NNNGAAAAAAGGGATGTCAA NGG 2 0.4821 Tier II
6 NC_000010.11 10 17416516 - ST8SIA6 NNNGAAAAGAGGGAAGTCAA NGG 2 0.4342 Tier II
7 NC_000002.12 2 173243507 + MAP3K20 NNNGAACAGGGGGATGCCAA NGG 2 0.3922 Tier II
8 NC_000006.12 6 166693922 - RPS6KA2 NNNGGACAGAGGGATGTCTA NGG 2 0.3877 Tier II
9 NC_000020.11 20 42721305 + PTPRT NNNGAACAAGGGGATGTCAA NGG 2 0.3571 Tier II
10 NC_000021.9 21 29698222 - GRIK1 NNNGAACAGAGGGATGAAAA NGG 2 0.2872 Tier II
11 NC_000017.11 17 44798069 + GJC1 NNNGAACCGAGGGAAGTCAA NGG 2 0.2481 Tier II
12 NC_000014.9 14 100065549 + EVL NNNGGACAGAGGGATGTCAA NAG 2 0.1867 Tier II
13 NC_000001.11 1 205571626 + MFSD4A NNNAAACAGAGGGATGTCCA NGG 2 0.1862 Tier II
14 NC_000006.12 6 44138460 - POLR1C NNNGAACAGAGGGCTGTCAG NGG 2 0.1639 Tier II
15 NC_000006.12 6 44138460 - TMEM63B NNNGAACAGAGGGCTGTCAG NGG 2 0.1639 Tier II
16 NC_000012.12 12 3206409 + TSPAN9 NNNGAACACAGGGCTGTCAA NGG 2 0.1154 Tier II
17 NC_000008.11 8 142258928 + TSNARE1 NNNGAACAGAGGGGTGTCCA NGG 2 0.0966 Tier II
18 NC_000008.11 8 98019643 + MATN2 NNNGAACAGAGGGATGTCAT NCG 2 0.0643 Tier II
19 NC_000017.11 17 44321411 + SLC25A39 NNNGGACAGAGGGAGGTCAA NGG 2 0.036 Tier II
20 NC_000006.12 6 116631366 - RSPH4A NNNGAACAGGGGGATGTCAA NGC 2 0.0123 Tier II
21 NC_000002.12 2 42400425 - KCNG3 NNNGAACAGAGGGATGGCAA NTG 2 0.0046 Tier II
22 NC_000014.9 14 63528399 + PPP2R5E NNNGAACAGAGGGATTTCAC NGG 2 0.0 Tier II
23 NC_000012.12 12 109236255 - ACACB NNNGAACAGAGGGCTCTCAA NGG 2 0.0 Tier II
24 NC_000002.12 2 173243507 + MAP3K20-AS1 NNNGAACAGGGGGATGCCAA NGG 2 0.3922 Tier III
25 NC_000002.12 2 138607201 - LINC02631 NNNGGAGAGAGGGATGTCAA NGG 2 0.3388 Tier III
26 NC_000002.12 2 121926145 + LOC105373592 NNNTAAGAGAGGGATGTCAA NGG 2 0.1711 Tier III
27 NC_000006.12 6 116631366 - LOC124901386 NNNGAACAGGGGGATGTCAA NGC 2 0.0123 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000069.6 3 131583185 + Papss1 NNNGAGCAGAGGGATGTCAA NGG 1 0.7143 Tier I
2 NC_000078.6 12 72493456 + Lrrc9 NNNGAGCAGAGGGAAGTCAA NGG 2 0.4135 Tier II
3 NC_000075.6 9 32029245 + Arhgap32 NNNGGACAGAGGGATGACAA NGG 2 0.384 Tier II
4 NC_000076.6 10 22700012 - Slc2a12 NNNGAACAAAGGGATGACAA NGG 2 0.3429 Tier II
5 NC_000076.6 10 89162363 + Ano4 NNNGAACAGAGGGGTGTAAA NGG 2 0.2513 Tier II
6 NC_000073.6 7 29335457 - Sipa1l3 NNNCACCAGAGGGATGTCAA NGG 2 0.2406 Tier II
7 NC_000070.6 4 107453417 - Glis1 NNNGAACAGAGGGCTGTCAT NGG 2 0.1286 Tier II
8 NC_000068.7 2 169865330 - Tshz2 NNNGAGCAGAGGGATGTGAA NGG 2 0.0952 Tier II
9 NC_000080.6 14 70641320 + Fgf17 NNNGCACAGAGGGATGGCAA NGG 2 0.0588 Tier II
10 NC_000085.6 19 39725693 + Cyp2c68 NNNGAACAGAAGGAGGTCAA NGG 2 0.05 Tier II
11 NC_000085.6 19 39793895 + Cyp2c40 NNNGAACAGAAGGAGGTCAA NGG 2 0.05 Tier II
12 NC_000085.6 19 39868808 + Cyp2c69 NNNGAACAGAAGGAGGTCAA NGG 2 0.05 Tier II
13 NC_000072.6 6 83041143 + Loxl3 NNNGAACAGAGGGAGGTCAG NGG 2 0.0382 Tier II
14 NC_000076.6 10 86395767 + Syn3 NNNCAACAGAGGGATCTCAA NGG 2 0.0 Tier II
15 NC_000072.6 6 88151817 - Gm38708 NNNGAATAGAGGGATGCCAA NGG 2 0.5735 Tier III
16 NC_000079.6 13 28689427 - 2610307P16Rik NNNGGAGAGAGGGATGTCAA NGG 2 0.3388 Tier III
17 NC_000077.6 11 114490295 + Gm39472 NNNGAAAAGATGGATGTCAA NGG 2 0.2885 Tier III
18 NC_000078.6 12 77759320 - Gm35440 NNNGAACAGAGGCAAGTCAA NGG 2 0.2438 Tier III
19 NC_000068.7 2 45246395 - Vis1 NNNGAACTGAGGGATGTCAC NGG 2 0.0974 Tier III
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Other clones with same target sequence:

(none)