Construct: sgRNA BRDN0001148068
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- ACTTCAGACTCACGACGTAG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- CASK (8573)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77403
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000023.11 |
X |
41578507 |
- |
CASK |
NNNTCAGACTCACGACGTAG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000001.11 |
1 |
35718711 |
+ |
C1orf216 |
NNNTCGGACTCACGGCGTAG |
NGG |
2 |
0.4643 |
Tier II |
| 3 |
NC_000010.11 |
10 |
124019354 |
+ |
CHST15 |
NNNTCAGACTCACTCCGTAG |
NGG |
2 |
0.0727 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000086.7 |
X |
13561682 |
- |
Cask |
NNNTCAGACTCATGATGTAG |
NGG |
2 |
0.2154 |
Tier I |
| 2 |
NC_000078.6 |
12 |
110882381 |
+ |
Cinp |
NNNTCAGACTCACTACGTAA |
NGG |
2 |
0.25 |
Tier II |
| 3 |
NC_000073.6 |
7 |
49839993 |
- |
Prmt3 |
NNNTCAGACTCACTAGGTAG |
NGG |
2 |
0.041 |
Tier II |
| 4 |
NC_000075.6 |
9 |
61094611 |
+ |
Gm34004 |
NNNTCAGACTCACGATGTAG |
NTG |
2 |
0.012 |
Tier III |
Other clones with same target sequence:
(none)
