Construct: sgRNA BRDN0001148180
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- TCCAGACAACCCATTTCGAG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- ALK (238)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77391
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000002.12 |
2 |
29383813 |
- |
ALK |
NNNAGACAACCCATTTCGAG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000001.11 |
1 |
68184336 |
+ |
WLS |
NNNTGACAACCCATTTCCAG |
NGG |
2 |
0.303 |
Tier II |
| 3 |
NC_000022.11 |
22 |
43730976 |
+ |
EFCAB6 |
NNNAGACAACCCATTTTGAG |
NGA |
2 |
0.0324 |
Tier II |
| 4 |
NC_000001.11 |
1 |
68184336 |
+ |
GNG12-AS1 |
NNNTGACAACCCATTTCCAG |
NGG |
2 |
0.303 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000083.6 |
17 |
72051821 |
- |
Alk |
NNNAGCAAACCCATTTCGAG |
NGG |
2 |
0.3409 |
Tier I |
| 2 |
NC_000086.7 |
X |
144928837 |
+ |
Rtl4 |
NNNACACAACCCATTTCTAG |
NGG |
2 |
0.5238 |
Tier II |
| 3 |
NC_000081.6 |
15 |
4533970 |
- |
Plcxd3 |
NNNAGACAACTCATTTCGAA |
NGG |
2 |
0.2885 |
Tier II |
| 4 |
NC_000069.6 |
3 |
69332092 |
+ |
Ppm1l |
NNNAGACACCCCATTTCCAG |
NGG |
2 |
0.2721 |
Tier II |
Other clones with same target sequence:
(none)
