Construct: sgRNA BRDN0001148223
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- TTCAGTGAGAAGGGGCACAC
Original Target:
- Taxon:
- Homo sapiens (human)
- Gene:
- SBK1 (388228)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
Reference Sequence | Chromosome | Cut Position | Match Strand | Match Gene | Match Sequence | PAM Seq. | Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. | CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. | Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. | |
---|---|---|---|---|---|---|---|---|---|---|
1 | NC_000016.10 | 16 | 28317477 | - | SBK1 | NNNAGTGAGAAGGGGCACAC | NGG | 0 | 1.0 | Tier I |
2 | NC_000013.11 | 13 | 42057592 | - | DGKH | NNNACTGAGAAGGAGCACAC | NGG | 2 | 0.5893 | Tier II |
3 | NC_000001.11 | 1 | 37626704 | + | RSPO1 | NNNAGTGAGAAGAGGCACAA | NGG | 2 | 0.4615 | Tier II |
4 | NC_000007.14 | 7 | 101958218 | + | CUX1 | NNNGGTGGGAAGGGGCACAC | NGG | 2 | 0.4583 | Tier II |
5 | NC_000015.10 | 15 | 90229424 | - | SEMA4B | NNNGGTGGGAAGGGGCACAC | NGG | 2 | 0.4583 | Tier II |
6 | NC_000010.11 | 10 | 62664281 | + | LOC124902436 | NNNAGAGAGAAGGGGCACAA | NGG | 2 | 0.4333 | Tier II |
7 | NC_000005.10 | 5 | 142927297 | - | ARHGAP26 | NNNACTGAGAAGGGGCACAA | NGG | 2 | 0.3929 | Tier II |
8 | NC_000015.10 | 15 | 68284660 | - | FEM1B | NNNACTGAGAAGGGGCACAA | NGG | 2 | 0.3929 | Tier II |
9 | NC_000007.14 | 7 | 138764259 | + | ATP6V0A4 | NNNGGTGAGGAGGGGCACAC | NGG | 2 | 0.3472 | Tier II |
10 | NC_000005.10 | 5 | 149840874 | + | PPARGC1B | NNNAGGGAGGAGGGGCACAC | NGG | 2 | 0.3175 | Tier II |
11 | NC_000007.14 | 7 | 134552160 | - | AKR1B15 | NNNAGGGAGAAGGGGCACTC | NGG | 2 | 0.3077 | Tier II |
12 | NC_000007.14 | 7 | 24764500 | + | GSDME | NNNAGTGGGAATGGGCACAC | NGG | 2 | 0.2821 | Tier II |
13 | NC_000007.14 | 7 | 24764500 | + | LOC124901820 | NNNAGTGGGAATGGGCACAC | NGG | 2 | 0.2821 | Tier II |
14 | NC_000007.14 | 7 | 116500461 | + | CAV2 | NNNGGTGAGACGGGGCACAC | NGG | 2 | 0.25 | Tier II |
15 | NC_000005.10 | 5 | 33441890 | + | TARS1 | NNNAGTGAAAAGGGGCACGC | NGG | 2 | 0.2411 | Tier II |
16 | NC_000001.11 | 1 | 169158056 | - | NME7 | NNNAGTGAGTAGGGGCACAC | NAG | 2 | 0.2288 | Tier II |
17 | NC_000022.11 | 22 | 46783429 | + | TBC1D22A | NNNATTCAGAAGGGGCACAC | NGG | 2 | 0.2063 | Tier II |
18 | NC_000011.10 | 11 | 114091939 | - | ZBTB16 | NNNAGTGAGAAGGGGCGCAC | NGG | 1 | 0.1765 | Tier II |
19 | NC_000018.10 | 18 | 11755700 | + | GNAL | NNNAGTGAGGAGTGGCACAC | NGG | 2 | 0.1667 | Tier II |
20 | NC_000006.12 | 6 | 161748717 | + | PRKN | NNNAGTGAGAAGGGGCACTT | NGG | 2 | 0.1615 | Tier II |
21 | NC_000007.14 | 7 | 132644476 | - | PLXNA4 | NNNAGTGAGAAGGAGGACAC | NGG | 2 | 0.1154 | Tier II |
22 | NC_000002.12 | 2 | 109319551 | + | RANBP2 | NNNAGTGAGAGGGGGCTCAC | NGG | 2 | 0.0867 | Tier II |
23 | NC_000002.12 | 2 | 109319551 | + | SH3RF3 | NNNAGTGAGAGGGGGCTCAC | NGG | 2 | 0.0867 | Tier II |
24 | NC_000014.9 | 14 | 104792089 | + | AKT1 | NNNAGTGAGGAGGGGGACAC | NGG | 2 | 0.0855 | Tier II |
25 | NC_000019.10 | 19 | 1293844 | - | EFNA2 | NNNGGTGAGAAGGGGCAGAC | NGG | 2 | 0.0833 | Tier II |
26 | NC_000012.12 | 12 | 76073771 | + | NAP1L1 | NNNATTGAGAAGGGGCACAC | NAG | 2 | 0.0778 | Tier II |
27 | NC_000016.10 | 16 | 25884994 | + | HS3ST4 | NNNAGTGAGAAGGGGCAGTC | NGG | 2 | 0.0718 | Tier II |
28 | NC_000003.12 | 3 | 30665809 | - | TGFBR2 | NNNAGTGAGAAGGGGTCCAC | NGG | 2 | 0.0543 | Tier II |
29 | NC_000006.12 | 6 | 43046632 | + | CUL7 | NNNAGAGAGAAGGGGCACAG | NGG | 2 | 0.051 | Tier II |
30 | NC_000001.11 | 1 | 21890414 | - | HSPG2 | NNNAGTGAGAAGGGGCTCCC | NGG | 2 | 0.0276 | Tier II |
31 | NC_000001.11 | 1 | 34169952 | + | C1orf94 | NNNAGTGAGAAGGGGCCCAC | NGC | 2 | 0.0039 | Tier II |
32 | NC_000004.12 | 4 | 160013469 | - | LOC107986324 | NNNAGAGAGAAGGAGCACAC | NGG | 2 | 0.65 | Tier III |
33 | NC_000007.14 | 7 | 134552160 | - | LOC105375520 | NNNAGGGAGAAGGGGCACTC | NGG | 2 | 0.3077 | Tier III |
34 | NC_000004.12 | 4 | 3783027 | + | LOC124900651 | NNNAGCGAGAAGGGGCGCAC | NGG | 2 | 0.1604 | Tier III |
35 | NC_000001.11 | 1 | 16165903 | - | EPHA2-AS1 | NNNAGTGAGCAGGGGCCCAC | NGG | 2 | 0.0588 | Tier III |
36 | NC_000019.10 | 19 | 10064708 | + | C3P1 | NNNAGTGAGAAGGGGCTCAT | NGG | 2 | 0.04 | Tier III |
37 | NC_000010.11 | 10 | 29100292 | - | LOC107984171 | NNNAGTGAGAATGGGCACAC | NTG | 2 | 0.015 | Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
Reference Sequence | Chromosome | Cut Position | Match Strand | Match Gene | Match Sequence | PAM Seq. | Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. | CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. | Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. | |
---|---|---|---|---|---|---|---|---|---|---|
1 | NC_000067.6 | 1 | 193330854 | - | Lamb3 | NNNAGTGGGAAGGGGCACAC | NGG | 1 | 0.7333 | Tier I |
2 | NC_000070.6 | 4 | 96010892 | - | Hook1 | NNNAATGAGAAAGGGCACAC | NGG | 2 | 0.8089 | Tier II |
3 | NC_000080.6 | 14 | 16365839 | - | Top2b | NNNAGAGAGAAAGGGCACAC | NGG | 2 | 0.8089 | Tier II |
4 | NC_000078.6 | 12 | 83471995 | - | Dpf3 | NNNAGTGGGAAGGGGCACAC | NGG | 1 | 0.7333 | Tier II |
5 | NC_000085.6 | 19 | 31709347 | + | Prkg1 | NNNACAGAGAAGGGGCACAC | NGG | 2 | 0.681 | Tier II |
6 | NC_000075.6 | 9 | 57959596 | + | Sema7a | NNNAGTGAATAGGGGCACAC | NGG | 2 | 0.5672 | Tier II |
7 | NC_000077.6 | 11 | 116064963 | + | Unc13d | NNNAGAGAGAGGGGGCACAC | NGG | 2 | 0.5633 | Tier II |
8 | NC_000073.6 | 7 | 64549566 | - | Apba2 | NNNAGTGAGGAGGGGCACAC | NGG | 1 | 0.5556 | Tier II |
9 | NC_000070.6 | 4 | 84593133 | - | Bnc2 | NNNAGTGAGAACGGACACAC | NGG | 2 | 0.4983 | Tier II |
10 | NC_000075.6 | 9 | 21433460 | - | Dnm2 | NNNAGTGAGAGGGAGCACAC | NGG | 2 | 0.4875 | Tier II |
11 | NC_000067.6 | 1 | 178911694 | + | Kif26b | NNNAGTGAGAAGAGGCACAA | NGG | 2 | 0.4615 | Tier II |
12 | NC_000075.6 | 9 | 101125414 | + | Ppp2r3a | NNNAGTCAGAGGGGGCACAC | NGG | 2 | 0.4469 | Tier II |
13 | NC_000075.6 | 9 | 67235190 | - | Tln2 | NNNAGTGGGAACGGGCACAC | NGG | 2 | 0.3882 | Tier II |
14 | NC_000073.6 | 7 | 24709427 | + | Lypd10 | NNNAGGGAGAAGGGGCATAC | NGG | 2 | 0.3673 | Tier II |
15 | NC_000084.6 | 18 | 61385578 | + | Ppargc1b | NNNACTGAGAAGGCGCACAC | NGG | 2 | 0.3367 | Tier II |
16 | NC_000083.6 | 17 | 56455893 | + | Ptprs | NNNAGGTAGAAGGGGCACAC | NGG | 2 | 0.3265 | Tier II |
17 | NC_000068.7 | 2 | 119400913 | + | Ino80 | NNNAGTGAGAAGCAGCACAC | NGG | 2 | 0.3158 | Tier II |
18 | NC_000067.6 | 1 | 78404293 | - | Sgpp2 | NNNAGGGACAAGGGGCACAC | NGG | 2 | 0.3077 | Tier II |
19 | NC_000067.6 | 1 | 133238353 | + | Plekha6 | NNNAGTAAGATGGGGCACAC | NGG | 2 | 0.3077 | Tier II |
20 | NC_000073.6 | 7 | 137115742 | - | Mgmt | NNNAGAGAGATGGGGCACAC | NGG | 2 | 0.2667 | Tier II |
21 | NC_000077.6 | 11 | 78483421 | - | Sarm1 | NNNGGTGAGAAGGGGCACGC | NGG | 2 | 0.2344 | Tier II |
22 | NC_000081.6 | 15 | 59339949 | + | Washc5 | NNNAGGGAGAAGTGGCACAC | NGG | 2 | 0.1714 | Tier II |
23 | NC_000077.6 | 11 | 64060651 | + | Cox10 | NNNAGTGAGAAGGGACAGAC | NGG | 2 | 0.1255 | Tier II |
24 | NC_000070.6 | 4 | 134846393 | - | Maco1 | NNNAGTGAGACGGTGCACAC | NGG | 2 | 0.1067 | Tier II |
25 | NC_000078.6 | 12 | 12311349 | + | Cyria | NNNAGTGAGTAGGGGCACAG | NGG | 2 | 0.0519 | Tier II |
26 | NC_000080.6 | 14 | 52144199 | + | Rpgrip1 | NNNAGTCAGAAGGGGCACAC | NTG | 2 | 0.0268 | Tier II |
27 | NC_000072.6 | 6 | 113491064 | + | Creld1 | NNNAGTGAGAAGGGGCTGAC | NGG | 2 | 0.0178 | Tier II |
28 | NC_000080.6 | 14 | 60848533 | + | Mipep | NNNAGGGAGAAGGGGCACAC | NGC | 2 | 0.0127 | Tier II |
29 | NC_000071.6 | 5 | 23742486 | + | Pus7 | NNNCGTGAGAAGGGGCACAC | NGC | 2 | 0.0078 | Tier II |
30 | NC_000076.6 | 10 | 19608088 | - | Ifngr1 | NNNAGTGAGAAGGGTCACAC | NTG | 2 | 0.0056 | Tier II |
31 | NC_000070.6 | 4 | 125189398 | + | Gm32611 | NNNAGGGAGAAGGGGAACAC | NGG | 2 | 0.5714 | Tier III |
32 | NC_000080.6 | 14 | 118719205 | - | Gm27198 | NNNAGTGAGAAGGCACACAC | NGG | 2 | 0.4034 | Tier III |
33 | NC_000069.6 | 3 | 134015188 | - | Gm26691 | NNNAGTGAGAAGGGGAAGAC | NGG | 2 | 0.1333 | Tier III |