Construct: sgRNA BRDN0001148435
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- GGGCAGCCGACGGACCACGG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- MAP3K5 (4217)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76654
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000006.12 |
6 |
136791884 |
- |
MAP3K5 |
NNNCAGCCGACGGACCACGG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000023.11 |
X |
74603837 |
+ |
RLIM |
NNNCAGCTGACTGACCACGG |
NGG |
2 |
0.3365 |
Tier II |
| 3 |
NC_000011.10 |
11 |
134069455 |
+ |
JAM3 |
NNNCAGCCGTCGGACCCCGG |
NGG |
2 |
0.1557 |
Tier II |
| 4 |
NC_000003.12 |
3 |
187739358 |
- |
BCL6 |
NNNCTGCCGCCGGACCACGG |
NGG |
2 |
0.1212 |
Tier II |
| 5 |
NC_000009.12 |
9 |
69672590 |
- |
APBA1 |
NNNCAGCCGGCGGCCCACGG |
NGG |
2 |
0.119 |
Tier II |
| 6 |
NC_000014.9 |
14 |
72893560 |
- |
DPF3 |
NNNCAGCGGACGGACCGCGG |
NGG |
2 |
0.1134 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000073.6 |
7 |
141310944 |
+ |
Deaf1 |
NNNCAGCCCACTGACCACGG |
NGG |
2 |
0.2071 |
Tier I |
Other clones with same target sequence:
(none)
