Construct: sgRNA BRDN0001148481

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
ACTCACCATCAACACCCCAT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
RPS6KA1 (6195)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
75499

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000001.11 1 26554728 - RPS6KA1 NNNCACCATCAACACCCCAT NGG 0 1.0 Tier I
2 NC_000005.10 5 22331028 - CDH12 NNNCACCAACAACAACCCAT NGG 2 0.2063 Tier II
3 NC_000011.10 11 126872500 + KIRREL3 NNNCACCATCATCTCCCCAT NGG 2 0.1778 Tier II
4 NC_000015.10 15 67194376 - SMAD3 NNNCACCATCACCTCCCCAT NGG 2 0.1404 Tier II
5 NC_000001.11 1 107381136 - NTNG1 NNNCACCATCAACACCACAT NAG 2 0.121 Tier II
6 NC_000007.14 7 74661279 - GTF2I NNNCACCATCAACACCACCT NGG 2 0.0966 Tier II
7 NC_000008.11 8 132415421 + KCNQ3 NNNCACCATCACCACCCCAT NAG 2 0.0682 Tier II
8 NC_000012.12 12 103125406 + C12orf42 NNNCACCATCAAGACTCCAT NGG 2 0.042 Tier II
9 NC_000016.10 16 58037647 + MMP15 NNNCACCATCCACACCCCAC NGG 2 0.0364 Tier II
10 NC_000010.11 10 98796399 - HPSE2 NNNCACCATCAGCAGCCCAT NGG 2 0.0361 Tier II
11 NC_000019.10 19 10164077 + DNMT1 NNNCACCATCAATACCCCAT NTG 2 0.0273 Tier II
12 NC_000019.10 19 10166883 + DNMT1 NNNCACCATCAATACCCCAT NTG 2 0.0273 Tier II
13 NC_000011.10 11 126872500 + LOC105369559 NNNCACCATCATCTCCCCAT NGG 2 0.1778 Tier III
14 NC_000002.12 2 18483112 - LOC105373454 NNNCACCATCAACACCCTAG NGG 2 0.1134 Tier III
15 NC_000021.9 21 17764849 - LOC124900465 NNNCAGCATCAACACCCCCT NGG 2 0.1034 Tier III
16 NC_000001.11 1 232898504 - LOC101927711 NNNCACCCTCAACACCCCCT NGG 2 0.0887 Tier III
17 NC_000009.12 9 126132932 + LOC105376274 NNNCACCATCCACATCCCAT NGG 2 0.0267 Tier III
18 NC_000003.12 3 128467454 - DNAJB8-AS1 NNNCACCATCAACACCCCAG NGT 2 0.0028 Tier III
Download CSV

Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000070.6 4 133865774 + Rps6ka1 NNNCACCATCAGCACCCCAT NGG 1 0.7222 Tier I
2 NC_000071.6 5 27666261 - Dpp6 NNNTCCCATCAACACCCCAT NGG 2 0.4 Tier II
3 NC_000080.6 14 60017248 - Atp8a2 NNNCACCCACAACACCCCAT NGG 2 0.398 Tier II
4 NC_000075.6 9 28689452 + Opcml NNNCACTTTCAACACCCCAT NGG 2 0.3482 Tier II
5 NC_000073.6 7 134746603 - Dock1 NNNCACCACCACCACCCCAT NGG 2 0.2429 Tier II
6 NC_000077.6 11 77823187 - Myo18a NNNCACCCTCATCACCCCAT NGG 2 0.1429 Tier II
7 NC_000084.6 18 6628019 - 4921524L21Rik NNNCACCATCAGCACCCCAG NGG 2 0.1275 Tier II
8 NC_000068.7 2 143833150 - Bfsp1 NNNCACCATCAGCATCCCAT NGG 2 0.0481 Tier II
9 NC_000078.6 12 90138651 - Nrxn3 NNNCACCATCAACATCCAAT NGG 2 0.0359 Tier II
10 NC_000070.6 4 130934420 - Laptm5 NNNCACCATCAAGAACCCAT NGG 2 0.0303 Tier II
11 NC_000085.6 19 4549007 + Pcx NNNCACCATCACCACCCCAT NGT 2 0.0042 Tier II
12 NC_000072.6 6 103738051 + Gm52914 NNNCACCACCCACACCCCAT NGG 2 0.3692 Tier III
13 NC_000078.6 12 54132278 + Gm35818 NNNCACCAACAAAACCCCAT NGG 2 0.3571 Tier III
14 NC_000069.6 3 100536528 - Gm40106 NNNCTCCATCAATACCCCAT NGG 2 0.2545 Tier III
15 NC_000082.6 16 49425067 - Gm6931 NNNCACCAGCAACACCCCAT NCG 2 0.0663 Tier III
Download CSV

Other clones with same target sequence:

(none)

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