Construct: sgRNA BRDN0001148500

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
CTGAAGGTGTCTGGCAGAGC

Original Target:

Taxon:
Homo sapiens (human)
Gene:
NO_SITE control
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
80260

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000011.10 11 75089645 + OR2AT4 NNNAAGGTCTCTGGCAGAGA NGG 2 0.2692 Tier I
2 NC_000011.10 11 64598527 + SLC22A12 NNNAAGGTGGCTGGCAGAGT NGG 2 0.15 Tier I
3 NC_000010.11 10 45787218 - WASHC2C NNNAAGGTGTCTGCCTGAGC NGG 2 0.0 Tier I
4 NC_000010.11 10 50127766 - WASHC2A NNNAAGGTGTCTGCCTGAGC NGG 2 0.0 Tier I
5 NC_000007.14 7 30781086 - MINDY4 NNNAAGGAGTCTGGCAGAGC NGG 1 0.8 Tier II
6 NC_000008.11 8 91339418 - SLC26A7 NNNAAGGTGAATGGCAGAGC NGG 2 0.6429 Tier II
7 NC_000010.11 10 116263472 + GFRA1 NNNAAGGTGAATGGCAGAGC NGG 2 0.6429 Tier II
8 NC_000012.12 12 119128697 + SRRM4 NNNGAAGTGTCTGGCAGAGC NGG 2 0.625 Tier II
9 NC_000011.10 11 124642993 - SIAE NNNAAGGTGTCAGACAGAGC NGG 2 0.6 Tier II
10 NC_000003.12 3 94088541 + NSUN3 NNNAAGGTAACTGGCAGAGC NGG 2 0.551 Tier II
11 NC_000005.10 5 64899322 + CWC27 NNNAAGGTGCCTGGCAGAGC NGG 1 0.5333 Tier II
12 NC_000010.11 10 103703920 - SH3PXD2A NNNAATCTGTCTGGCAGAGC NGG 2 0.4583 Tier II
13 NC_000005.10 5 10476247 - ROPN1L NNNGAGGGGTCTGGCAGAGC NGG 2 0.4583 Tier II
14 NC_000012.12 12 121782573 - RHOF NNNGAGGTGTCTGGCAGAGA NGG 2 0.3125 Tier II
15 NC_000009.12 9 117411067 + ASTN2 NNNTAGGTGTCTGGCAGACC NGG 2 0.2853 Tier II
16 NC_000017.11 17 82445580 - CYBC1 NNNCAGGGGTCTGGCAGAGC NGG 2 0.2588 Tier II
17 NC_000013.11 13 113227041 + CUL4A NNNAAGGTGTCTGGCAGTGA NGG 2 0.25 Tier II
18 NC_000003.12 3 202004 + CHL1 NNNAAAGTGTCTGGCACAGC NGG 2 0.2353 Tier II
19 NC_000006.12 6 33695900 - ITPR3 NNNAGGGTGTCTGGCAGAGT NGG 2 0.216 Tier II
20 NC_000008.11 8 58835822 + TOX NNNAAGGTGAGTGGCAGAGC NGG 2 0.2143 Tier II
21 NC_000005.10 5 122825383 - SNX2 NNNAAGGAGTCTGGCAGAGC NAG 2 0.2074 Tier II
22 NC_000017.11 17 6610385 - KIAA0753 NNNAAGGTGTCAGGCAGAGC NAG 2 0.2074 Tier II
23 NC_000008.11 8 143573229 - NAPRT NNNAAGGTGTCTGACAGAGC NAG 2 0.1944 Tier II
24 NC_000002.12 2 69745226 + ANXA4 NNNGAGGTGTTTGGCAGAGC NGG 2 0.1923 Tier II
25 NC_000017.11 17 76685936 + MXRA7 NNNCAGGTGTCGGGCAGAGC NGG 2 0.1765 Tier II
26 NC_000017.11 17 33382102 - ASIC2 NNNCCGGTGTCTGGCAGAGC NGG 2 0.1765 Tier II
27 NC_000007.14 7 134533653 + AKR1B10 NNNAATGTGTGTGGCAGAGC NGG 2 0.1667 Tier II
28 NC_000007.14 7 134572265 + AKR1B15 NNNAATGTGTGTGGCAGAGC NGG 2 0.1667 Tier II
29 NC_000017.11 17 72752020 + SLC39A11 NNNCAGGTGTCTCGCAGAGC NGG 2 0.1486 Tier II
30 NC_000007.14 7 15128163 - AGMO NNNAAGGTGTCTGCCAGAGT NGG 2 0.1286 Tier II
31 NC_000003.12 3 124153043 + KALRN NNNAAGGTTTCTGGCACAGC NGG 2 0.1255 Tier II
32 NC_000007.14 7 74056961 + ELN NNNAAGGTGTCTGGCAGGGT NGG 2 0.12 Tier II
33 NC_000001.11 1 53528397 - GLIS1 NNNCAGGTGTGTGGCAGAGC NGG 2 0.0882 Tier II
34 NC_000011.10 11 47344445 + MYBPC3 NNNCAGGTGTGTGGCAGAGC NGG 2 0.0882 Tier II
35 NC_000001.11 1 160681075 - CD48 NNNAAGGTGTCTGGGAGAGC NGG 1 0.05 Tier II
36 NC_000004.12 4 176754422 + VEGFC NNNAAGGTGTCTGGCAAAGC NTG 2 0.0364 Tier II
37 NC_000015.10 15 52292935 + MYO5C NNNAAGGAGTCTGGCAGAGC NTG 2 0.0312 Tier II
38 NC_000009.12 9 19856738 + SLC24A2 NNNAAGGTGTCTGGCAGTGC NTG 2 0.0195 Tier II
39 NC_000001.11 1 9328125 - SPSB1 NNNAAGGTGTGTGGCAGAGC NGA 2 0.0174 Tier II
40 NC_000002.12 2 290009 + LOC101927262 NNNAAAGTGTCCGGCAGAGC NGG 2 0.9474 Tier III
41 NC_000007.14 7 30781086 - INMT-MINDY4 NNNAAGGAGTCTGGCAGAGC NGG 1 0.8 Tier III
42 NC_000005.10 5 100247640 + LOC105379101 NNNAAGGTGTCAGGCAAAGC NGG 2 0.7467 Tier III
43 NC_000010.11 10 33002581 + ITGB1-DT NNNAAGAGGTCTGGCAGAGC NGG 2 0.7333 Tier III
44 NC_000006.12 6 29263001 + OR2U1P NNNAAGGTTTCTGACAGAGC NGG 2 0.4 Tier III
45 NC_000006.12 6 29263001 + LINC03003 NNNAAGGTTTCTGACAGAGC NGG 2 0.4 Tier III
46 NC_000001.11 1 89756218 - LOC107985743 NNNAAGTTGCCTGGCAGAGC NGG 2 0.3048 Tier III
47 NC_000005.10 5 122825383 - LOC105379154 NNNAAGGAGTCTGGCAGAGC NAG 2 0.2074 Tier III
48 NC_000001.11 1 219459826 + LYPLAL1-AS1 NNNATGGTGCCTGGCAGAGC NGG 2 0.1939 Tier III
49 NC_000008.11 8 93565897 - CIBAR1-DT NNNAAGGTTTCTTGCAGAGC NGG 2 0.16 Tier III
50 NC_000015.10 15 81329882 - TMC3-AS1 NNNCAGGTGTCTGCCAGAGC NGG 2 0.1513 Tier III
51 NC_000010.11 10 35697334 - RPL7P37 NNNAAGGTTTCTGGCACAGC NGG 2 0.1255 Tier III
52 NC_000010.11 10 110550819 + RPL7P35 NNNAAGGTTTCTGGCACAGC NGG 2 0.1255 Tier III
53 NC_000013.11 13 40439909 - LINC00598 NNNAAGGTGTCTTGGAGAGC NGG 2 0.015 Tier III
Download CSV

Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000067.6 1 43049783 + Tgfbrap1 NNNAAGGGTTCTGGCAGAGC NGG 2 0.3911 Tier I
2 NC_000083.6 17 34449253 - BC051142 NNNAAGGTGTCTGGCGGAGC NGA 2 0.0134 Tier I
3 NC_000077.6 11 93581497 - Car10 NNNAACGTGTCTGGCAGAGC NGG 1 0.6818 Tier II
4 NC_000078.6 12 78871501 + Eif2s1 NNNAGGGTGACTGGCAGAGC NGG 2 0.6171 Tier II
5 NC_000077.6 11 100118676 - Krt13 NNNACAGTGTCTGGCAGAGC NGG 2 0.5 Tier II
6 NC_000073.6 7 127244122 + Zfp771 NNNAAGCTGTCTGGCAGATC NGG 2 0.4583 Tier II
7 NC_000078.6 12 105479134 + D430019H16Rik NNNGAGGGGTCTGGCAGAGC NGG 2 0.4583 Tier II
8 NC_000071.6 5 127280486 - Tmem132c NNNAAGGTGTCAGGCAGTGC NGG 2 0.4 Tier II
9 NC_000081.6 15 36193714 - Spag1 NNNAAGGAGTCTGGCAGGGC NGG 2 0.32 Tier II
10 NC_000074.6 8 106260051 - Smpd3 NNNCAGGAGTCTGGCAGAGC NGG 2 0.2824 Tier II
11 NC_000076.6 10 76825967 + Pcbp3 NNNAAGGTCTCTGGCAGGGC NGG 2 0.2154 Tier II
12 NC_000085.6 19 38006340 + Myof NNNAAGGTGGTTGGCAGAGC NGG 2 0.1538 Tier II
13 NC_000074.6 8 9412389 + Fam155a NNNAAGCTGTCTGGAAGAGC NGG 2 0.1528 Tier II
14 NC_000082.6 16 31992090 - Senp5 NNNAAGGTGTCTGGCAGACT NGG 2 0.1345 Tier II
15 NC_000074.6 8 115206134 - Wwox NNNAAGGTGGCTGGCAGAGC NAG 2 0.1296 Tier II
16 NC_000074.6 8 114809056 + Wwox NNNAAGGTGTCTGGCAGTGC NAG 2 0.1296 Tier II
17 NC_000069.6 3 96026480 - Vps45 NNNAAGGTGCCTGGCACAGC NGG 2 0.1255 Tier II
18 NC_000076.6 10 128715416 - Pmel NNNAAGGTGTCTGGAAGGGC NGG 2 0.0889 Tier II
19 NC_000070.6 4 135336630 + Srrm1 NNNAAGGTGTGTGTCAGAGC NGG 2 0.0667 Tier II
20 NC_000067.6 1 73015675 + Tnp1 NNNAAGGTGTCTGGAAGAGC NAG 2 0.0576 Tier II
21 NC_000071.6 5 127627097 + Slc15a4 NNNAAGGTGTATGGCAGAGG NGG 2 0.0441 Tier II
22 NC_000073.6 7 97436481 - Kctd14 NNNAAGGTGACTGGGAGAGC NGG 2 0.0429 Tier II
23 NC_000069.6 3 110132482 + Ntng1 NNNAGGGTGTCTGGCAGAGG NGG 2 0.0424 Tier II
24 NC_000074.6 8 79057316 + Zfp827 NNNAAGGTGTCTGGCAGAGC NGC 1 0.0222 Tier II
25 NC_000075.6 9 37638994 + Siae NNNATGGTGTCTGGCAGAGC NTG 2 0.0142 Tier II
26 NC_000076.6 10 89432216 + Gas2l3 NNNGAGGTGTCTGGCAGAGC NGC 2 0.0139 Tier II
27 NC_000071.6 5 92931599 - Shroom3 NNNAAGGTGTCTGTCAGAGC NTG 2 0.0104 Tier II
28 NC_000079.6 13 59453206 - Agtpbp1 NNNAAGGTGTCTGGGAGAGC NGA 2 0.0035 Tier II
29 NC_000067.6 1 188937321 + Ush2a NNNAAGGTGTCTGGCAGAGG NGC 2 0.0013 Tier II
30 NC_000076.6 10 60080349 + Ascc1 NNNAAGGTGGCTGGCTGAGC NGG 2 0.0 Tier II
31 NC_000078.6 12 37294251 + Agmo NNNAAGGTTTCTGGCTGAGC NGG 2 0.0 Tier II
32 NC_000072.6 6 25130947 + Gm30658 NNNAACATGTCTGGCAGAGC NGG 2 0.6818 Tier III
33 NC_000083.6 17 14517740 + Gm34916 NNNACAGTGTCTGGCAGAGC NGG 2 0.5 Tier III
34 NC_000071.6 5 127280486 - Tmem132cos NNNAAGGTGTCAGGCAGTGC NGG 2 0.4 Tier III
35 NC_000076.6 10 60228439 + Gm2038 NNNAAGGTGTCTGGAGGAGC NGG 2 0.0427 Tier III
36 NC_000078.6 12 32936631 + 4933406C10Rik NNNAAGGTGTCTGGCTGACC NGG 2 0.0 Tier III
Download CSV

Other clones with same target sequence:

(none)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.