Construct: sgRNA BRDN0001148592

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
GATGGAGCAGTGGTTTAACA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
TSSK1B (83942)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
76668

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000005.10 5 113434641 + TSSK1B NNNGGAGCAGTGGTTTAACA NGG 0 1.0 Tier I
2 NC_000005.10 5 113434641 + MCC NNNGGAGCAGTGGTTTAACA NGG 0 1.0 Tier II
3 NC_000007.14 7 24864344 - OSBPL3 NNNCGAGCTGTGGTTTAACA NGG 2 0.3176 Tier II
4 NC_000006.12 6 109430143 + PPIL6 NNNTGAGCAGTGGTTCAACA NGG 2 0.2424 Tier II
5 NC_000007.14 7 100376161 - PILRA NNNGGTGCAGTGGTTTACCA NGG 2 0.1361 Tier II
6 NC_000003.12 3 17160874 + TBC1D5 NNNGAAGCAGTGGTTTAAGA NGG 2 0.1083 Tier II
7 NC_000005.10 5 172902318 + ERGIC1 NNNGGAGCAGTGGCTTAACC NGG 2 0.0649 Tier II
8 NC_000015.10 15 67413331 - IQCH NNNGCAGCAGTGGTTTAACA NGC 2 0.0175 Tier II
9 NC_000009.12 9 129845443 + USP20 NNNGGAGCAGAGGTTTAACA NGC 2 0.0167 Tier II
10 NC_000023.11 X 68256003 + OPHN1 NNNGGAGCAGAGGTTTAACA NGC 2 0.0167 Tier II
11 NC_000021.9 21 29328116 + BACH1 NNNTGAGCAGTGGTTTAACA NTG 2 0.0142 Tier II
12 NC_000005.10 5 133810537 + FSTL4 NNNGGAGCAGGGGTTTAACA NGC 2 0.0089 Tier II
13 NC_000005.10 5 113434641 + LOC107986366 NNNGGAGCAGTGGTTTAACA NGG 0 1.0 Tier III
14 NC_000021.9 21 23363895 - D21S2088E NNNGGAGTAGTGGATTAACA NGG 2 0.5417 Tier III
15 NC_000002.12 2 211057099 - LOC107985978 NNNGGAGTAGTGGTTTACCA NGG 2 0.1667 Tier III
16 NC_000015.10 15 67413331 - IQCH-AS1 NNNGCAGCAGTGGTTTAACA NGC 2 0.0175 Tier III
17 NC_000001.11 1 192756365 + LOC105371665 NNNGGAGCAGAGGTTTAACA NGC 2 0.0167 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000069.6 3 103914861 - Rsbn1 NNNGGAGCAGAGGTTCAACA NGG 2 0.5 Tier I
2 NC_000082.6 16 5989863 - Rbfox1 NNNAGAGCAGAGGTTTAACA NGG 2 0.675 Tier II
3 NC_000072.6 6 137623428 - Eps8 NNNGGAGCAATGGATTAACA NGG 2 0.5778 Tier II
4 NC_000083.6 17 13728586 + Tcte2 NNNCGAGCTGTGGTTTAACA NGG 2 0.3176 Tier II
5 NC_000080.6 14 17680273 + Thrb NNNAGAGCAGTGTTTTAACA NGG 2 0.27 Tier II
6 NC_000083.6 17 67813761 + Lama1 NNNGGATCAGTGGTTTAAAA NGG 2 0.2449 Tier II
7 NC_000078.6 12 72100562 + Jkamp NNNGGAGCAGTGGTTTAGCT NGG 2 0.24 Tier II
8 NC_000073.6 7 16113292 - Napa NNNGGAGCAGTGCTTTAACA NAG 2 0.1092 Tier II
9 NC_000085.6 19 38540486 - Plce1 NNNGGAGCAGTGGTTTCTCA NGG 2 0.0882 Tier II
10 NC_000068.7 2 140716328 - Macrod2 NNNGGAGCAGTGGTTTGAGA NGG 2 0.0221 Tier II
11 NC_000086.7 X 10589356 - Tspan7 NNNGGAGCAGTGCTGTAACA NGG 2 0.0211 Tier II
12 NC_000081.6 15 12229910 - Mtmr12 NNNGGAGCTGTGGTTTAACA NGC 2 0.0133 Tier II
13 NC_000082.6 16 91029563 + Paxbp1 NNNGGAGCAGTTGTTTAACA NGC 2 0.0085 Tier II
14 NC_000082.6 16 5989863 - 1700123O21Rik NNNAGAGCAGAGGTTTAACA NGG 2 0.675 Tier III
15 NC_000081.6 15 63471087 + Gm20740 NNNGGATCAGTGGTTTAACT NGG 2 0.3429 Tier III
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Other clones with same target sequence:

(none)