Construct: sgRNA BRDN0001148669

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
GCCCTGAATCAACATAAACA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
STK36 (27148)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
77277

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000002.12 2 218693802 - STK36 NNNCTGAATCAACATAAACA NGG 0 1.0 Tier I
2 NC_000003.12 3 188198679 - LPP NNNATGAATCAACATAAACA NGG 1 0.8421 Tier II
3 NC_000006.12 6 13066766 - PHACTR1 NNNCTGAGACAACATAAACA NGG 2 0.681 Tier II
4 NC_000006.12 6 166557338 + RPS6KA2 NNNCTAAATCGACATAAACA NGG 2 0.65 Tier II
5 NC_000004.12 4 71336761 - SLC4A4 NNNATTAATCAACATAAACA NGG 2 0.5614 Tier II
6 NC_000002.12 2 153734470 + GALNT13 NNNCTGAAGAAACATAAACA NGG 2 0.5365 Tier II
7 NC_000002.12 2 241489118 - FARP2 NNNCTGAATCAACATAAGCA NGG 1 0.4 Tier II
8 NC_000002.12 2 105833860 - NCK2 NNNCTGAAACAACATAAAAA NGG 2 0.398 Tier II
9 NC_000006.12 6 152619332 + SYNE1 NNNCTGATCCAACATAAACA NGG 2 0.3956 Tier II
10 NC_000001.11 1 207647782 - CR1L NNNCAGAGTCAACATAAACA NGG 2 0.3667 Tier II
11 NC_000013.11 13 91788766 - GPC5 NNNCTGAAACAAAATAAACA NGG 2 0.3571 Tier II
12 NC_000001.11 1 65329199 - DNAJC6 NNNCACAATCAACATAAACA NGG 2 0.3409 Tier II
13 NC_000005.10 5 88185923 + TMEM161B NNNCTGAATAATCATAAACA NGG 2 0.2889 Tier II
14 NC_000006.12 6 124668626 - NKAIN2 NNNCTGAATCAACCTAAACA NGG 1 0.2143 Tier II
15 NC_000004.12 4 16768716 - LDB2 NNNCTGATTCAAAATAAACA NGG 2 0.1648 Tier II
16 NC_000019.10 19 34432225 - UBA2 NNNCTGAATCATCATAAATA NGG 2 0.1538 Tier II
17 NC_000005.10 5 90640894 - ADGRV1 NNNCTGAATCACCAAAAACA NGG 2 0.1524 Tier II
18 NC_000015.10 15 66766599 + SMAD6 NNNCTGAAGCAACCTAAACA NGG 2 0.1327 Tier II
19 NC_000003.12 3 23899269 + NKIRAS1 NNNCTGAATCAACACAAATA NGG 2 0.1259 Tier II
20 NC_000005.10 5 151846950 - GLRA1 NNNCTGAATCAACAAAGACA NGG 2 0.1022 Tier II
21 NC_000011.10 11 31731827 + ELP4 NNNCTGAATCATCACAAACA NGG 2 0.0909 Tier II
22 NC_000006.12 6 17784583 + KIF13A NNNCTGAATCAACATAACTA NGG 2 0.0879 Tier II
23 NC_000007.14 7 130496592 - MEST NNNCTTAATCAACATAAACA NGA 2 0.0463 Tier II
24 NC_000003.12 3 40232192 + MYRIP NNNCTGAACCAACAGAAACA NGG 2 0.0462 Tier II
25 NC_000005.10 5 75410891 + CERT1 NNNCTGAATTAACATAAACA NTG 2 0.0367 Tier II
26 NC_000011.10 11 22665136 + GAS2 NNNCTGAATCAACAAAAACA NTG 2 0.0226 Tier II
27 NC_000009.12 9 33148450 + B4GALT1 NNNCTGAATCAACATAAACA NGC 1 0.0222 Tier II
28 NC_000006.12 6 61859717 + KHDRBS2 NNNATGAATCAACATAAACA NGC 2 0.0187 Tier II
29 NC_000023.11 X 31925049 + DMD NNNCTGAAACAACATAAACA NGT 2 0.015 Tier II
30 NC_000001.11 1 30932198 - PUM1 NNNTTGAATCAACATAAACA NGT 2 0.0129 Tier II
31 NC_000015.10 15 48419874 + FBN1 NNNCTGAATGAACATAAACA NGT 2 0.0063 Tier II
32 NC_000011.10 11 67176333 - KDM2A NNNCTGAATCTACATAAACA NGT 2 0.005 Tier II
33 NC_000012.12 12 77854273 - NAV3 NNNCTGAATCAACAGAAACA NGC 2 0.0011 Tier II
34 NC_000002.12 2 11692476 - LPIN1 NNNCTGAGTCAACATCAACA NGG 2 0.0 Tier II
35 NC_000001.11 1 207647782 - CD46P1 NNNCAGAGTCAACATAAACA NGG 2 0.3667 Tier III
36 NC_000002.12 2 144559760 - LINC01412 NNNCTGAAACAACATAGACA NGG 2 0.1639 Tier III
37 NC_000012.12 12 89527271 + POC1B-AS1 NNNCTGAATCAACATATACA NGG 1 0.1333 Tier III
38 NC_000011.10 11 31731827 + ELP4-AS1 NNNCTGAATCATCACAAACA NGG 2 0.0909 Tier III
39 NC_000003.12 3 40232192 + EIF1B-AS1 NNNCTGAACCAACAGAAACA NGG 2 0.0462 Tier III
Download CSV

Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000072.6 6 125788053 - Ano2 NNNCTGAAAAAACATAAACA NGG 2 0.8048 Tier II
2 NC_000085.6 19 17342778 - Gcnt1 NNNCTGAATAAACATAAACT NGG 2 0.52 Tier II
3 NC_000068.7 2 140497196 - Macrod2 NNNCAGAAACAACATAAACA NGG 2 0.4643 Tier II
4 NC_000068.7 2 34457273 - Mapkap1 NNNCTGAATCAACAAAAACG NGG 2 0.4427 Tier II
5 NC_000077.6 11 47949742 - Sgcd NNNCTGAATCCACATAAACA NGG 1 0.4 Tier II
6 NC_000070.6 4 14613244 - Slc26a7 NNNCTGAATGAACATAAACA NGG 1 0.3889 Tier II
7 NC_000086.7 X 112115764 + Tex16 NNNCTGAATGAACATAAACA NGG 1 0.3889 Tier II
8 NC_000070.6 4 65772914 + Astn2 NNNCTGAAGCAACAAAAACA NGG 2 0.3584 Tier II
9 NC_000076.6 10 44322040 - Atg5 NNNCTGAAACAAAATAAACA NGG 2 0.3571 Tier II
10 NC_000068.7 2 3635590 - LOC108168726 NNNGTGAATCAACAAAAACA NGG 2 0.2895 Tier II
11 NC_000074.6 8 58461604 + Galntl6 NNNCTGAATCAACATAAACA NAG 1 0.2593 Tier II
12 NC_000076.6 10 75170056 + Bcr NNNCTGACTCAACAAAAACA NGG 2 0.2481 Tier II
13 NC_000077.6 11 8499285 - Tns3 NNNCTGTATCAAAATAAACA NGG 2 0.1683 Tier II
14 NC_000074.6 8 124642950 - 2310022B05Rik NNNCTGAACCAACATAGACA NGG 2 0.1629 Tier II
15 NC_000071.6 5 5665831 - Steap2 NNNCTGCATCATCATAAACA NGG 2 0.1458 Tier II
16 NC_000072.6 6 100759101 - Gxylt2 NNNCTGAATCAACCAAAACA NGG 2 0.1241 Tier II
17 NC_000068.7 2 77802224 - Zfp385b NNNCTGAAGCAACATACACA NGG 2 0.1092 Tier II
18 NC_000072.6 6 51927593 - Skap2 NNNCTGAATGAACACAAACA NGG 2 0.1061 Tier II
19 NC_000072.6 6 142107718 - Slco1a6 NNNCTGAATGAACACAAACA NGG 2 0.1061 Tier II
20 NC_000068.7 2 79382463 - Cerkl NNNCTGAATCAACTTGAACA NGG 2 0.1026 Tier II
21 NC_000078.6 12 75148516 - Kcnh5 NNNCTGAATCAAAATAAACA NAG 2 0.0997 Tier II
22 NC_000084.6 18 76968099 - Hdhd2 NNNCTGAATCAACCTAAAAA NGG 2 0.0918 Tier II
23 NC_000079.6 13 49586965 + Omd NNNCTGAATGAACATAAACC NGG 2 0.0884 Tier II
24 NC_000079.6 13 49586965 + Cenpp NNNCTGAATGAACATAAACC NGG 2 0.0884 Tier II
25 NC_000081.6 15 34952429 - Stk3 NNNCTGAATGAACATAAACC NGG 2 0.0884 Tier II
26 NC_000072.6 6 31444627 - Mkln1 NNNCAGAATCAACATAGACA NGG 2 0.0882 Tier II
27 NC_000086.7 X 109447327 + Gm34521 NNNCTGAATGAACATAGACA NGG 2 0.0686 Tier II
28 NC_000067.6 1 138614955 + Nek7 NNNCTGAATCAAGGTAAACA NGG 2 0.0636 Tier II
29 NC_000077.6 11 59666129 + Mprip NNNCTGAATCCACATAAAGA NGG 2 0.05 Tier II
30 NC_000084.6 18 12891122 + Osbpl1a NNNCTGAAACAACATAAACA NTG 2 0.0362 Tier II
31 NC_000076.6 10 31567501 - Rnf217 NNNCTGAATCAAGATAAACA NAG 2 0.0354 Tier II
32 NC_000076.6 10 53687428 - Fam184a NNNCTGAATCAACATAATCA NTG 2 0.0195 Tier II
33 NC_000084.6 18 12606454 - Ttc39c NNNCTGAGTCAACATAAACA NGT 2 0.0118 Tier II
34 NC_000068.7 2 104275645 + D430041D05Rik NNNCTGAATCAACAGAAACA NCG 2 0.0054 Tier II
35 NC_000085.6 19 25553787 - Dmrt1 NNNCTGAATCAAGATAAACA NGC 2 0.003 Tier II
36 NC_000084.6 18 53289228 - Snx24 NNNCTGAATCAACAGAAACA NTG 2 0.0019 Tier II
37 NC_000067.6 1 38831732 + Lonrf2 NNNCTGAATAAACATTAACA NGG 2 0.0 Tier II
38 NC_000073.6 7 100918787 + Arhgef17 NNNCTGAATCAAAATCAACA NGG 2 0.0 Tier II
39 NC_000072.6 6 125788053 - Gm38898 NNNCTGAAAAAACATAAACA NGG 2 0.8048 Tier III
40 NC_000072.6 6 58549562 - Gm45943 NNNGTGAAACAACATAAACA NGG 2 0.4643 Tier III
41 NC_000072.6 6 67701099 + Igk NNNGTGAAACAACATAAACA NGG 2 0.4643 Tier III
42 NC_000071.6 5 5665831 - Gm40262 NNNCTGCATCATCATAAACA NGG 2 0.1458 Tier III
43 NC_000074.6 8 25271225 - Gm39145 NNNCTTAATCAACATACACA NGG 2 0.1176 Tier III
44 NC_000070.6 4 87626858 - Gm34180 NNNCTGAATCAACATAAACG NTG 2 0.0298 Tier III
45 NC_000067.6 1 193684004 - Gm31870 NNNCTTAATCAACATAAACA NGC 2 0.0148 Tier III
Download CSV

Other clones with same target sequence:

(none)

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