Construct: sgRNA BRDN0001149001

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
GGCATCCAAAGATTGCAAGA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
DYRK3 (8444)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
75548

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000001.11 1 206648157 - DYRK3 NNNATCCAAAGATTGCAAGA NGG 0 1.0 Tier I
2 NC_000007.14 7 94535477 - CASD1 NNNATCCAAAGATTCCATGA NGG 2 0.1364 Tier I
3 NC_000022.11 22 20881055 + SNAP29 NNNATCCAAAGATTGAAAGA NGC 2 0.0222 Tier I
4 NC_000019.10 19 370037 + SPMAP2 NNNACCCAAAGAATGCAAGA NGG 2 0.6923 Tier II
5 NC_000005.10 5 61352830 + ZSWIM6 NNNAGCCAAAGATTGCAAGA NGG 1 0.64 Tier II
6 NC_000003.12 3 143718236 - SLC9A9 NNNATCCAAAGATTGCAAAG NGG 2 0.5462 Tier II
7 NC_000001.11 1 3126081 - PRDM16 NNNATTCACAGATTGCAAGA NGG 2 0.5306 Tier II
8 NC_000003.12 3 2223033 - CNTN4 NNNATCCAAAGAATGCAAAA NGG 2 0.4945 Tier II
9 NC_000020.11 20 5173220 - CDS2 NNNATCCAAAGAATGCAAAA NGG 2 0.4945 Tier II
10 NC_000003.12 3 89372145 - EPHA3 NNNATCCATAGATTCCAAGA NGG 2 0.1636 Tier II
11 NC_000018.10 18 79256513 - ATP9B NNNCTCCAAAGATTGCAAGA NAG 2 0.0915 Tier II
12 NC_000005.10 5 113170880 + MCC NNNATCCAAATATTGCCAGA NGG 2 0.0679 Tier II
13 NC_000012.12 12 66327945 + HELB NNNATCCAAAGATTTGAAGA NGG 2 0.022 Tier II
14 NC_000013.11 13 35003081 + NBEA NNNATCCAAAGATGGCAAGA NAG 2 0.0 Tier II
15 NC_000001.11 1 17010948 - ATP13A2 NNNATCCAAAGATGGGAAGA NGG 2 0.0 Tier II
16 NC_000004.12 4 104303851 + LOC105377350 NNNATCAAAACATTGCAAGA NGG 2 0.3214 Tier III
17 NC_000006.12 6 90341594 + LOC105377891 NNNATCCTAAGATTGCAAAA NGG 2 0.3061 Tier III
18 NC_000010.11 10 64284025 - LOC124902439 NNNATCCATAGATTGCATGA NGG 2 0.3 Tier III
19 NC_000005.10 5 103827988 - LOC105379107 NNNATCTAAAGATTGTAAGA NGG 2 0.25 Tier III
20 NC_000008.11 8 102474065 + LOC105375683 NNNATCAAAAGATTGTAAGA NGG 2 0.2308 Tier III
21 NC_000006.12 6 163371570 - LOC105378099 NNNATCCAAGGATTGCAGGA NGG 2 0.2222 Tier III
22 NC_000006.12 6 30267981 + HCG17 NNNATCCAAAAATTGGAAGA NGG 2 0.1538 Tier III
23 NC_000007.14 7 94535477 - LOC105375404 NNNATCCAAAGATTCCATGA NGG 2 0.1364 Tier III
24 NC_000019.10 19 45503137 + LOC107985314 NNNATGCAAAGAGTGCAAGA NGG 2 0.1304 Tier III
25 NC_000004.12 4 16341759 - LOC124900674 NNNAGCCAAAGATTGCCAGA NGG 2 0.1129 Tier III
26 NC_000020.11 20 45433350 - LOC105372631 NNNATCCCAAGAGTGCAAGA NGG 2 0.1118 Tier III
27 NC_000024.10 Y 13861984 - ANOS2P NNNATCCTAAGATTGCAAGA NTG 2 0.0167 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000071.6 5 44785022 + Ldb2 NNNAACCAAAGACTGCAAGA NGG 2 0.3947 Tier II
2 NC_000075.6 9 94793218 + Slc9a9 NNNATGCGAAGATTGCAAGA NGG 2 0.3667 Tier II
3 NC_000067.6 1 19133331 + Tfap2d NNNATCCAAATATTACAAGA NGG 2 0.362 Tier II
4 NC_000072.6 6 94100941 - Magi1 NNNCTCCAAAGATTGAAAGA NGG 2 0.3529 Tier II
5 NC_000070.6 4 104411431 - Dab1 NNNATCCAAAGATAGGAAGA NGG 2 0.0952 Tier II
6 NC_000082.6 16 29328471 + Atp13a5 NNNAACCAAAGATTGGAAGA NGG 2 0.0769 Tier II
7 NC_000069.6 3 24623191 + Naaladl2 NNNCTCCAAAGATTGCCAGA NGG 2 0.0623 Tier II
8 NC_000083.6 17 7180012 - Rps6ka2 NNNATCCAGAGATTGCAAGA NGA 2 0.0463 Tier II
9 NC_000084.6 18 72098416 - Dcc NNNATCCAAAGATTGCAATA NGT 2 0.0108 Tier II
10 NC_000071.6 5 91578560 - Parm1 NNNATCCAAAGTTTGCAAGA NGC 2 0.0074 Tier II
11 NC_000086.7 X 103440317 - Tsix NNNATCCAAAGAATGAAAGA NGG 2 0.6923 Tier III
12 NC_000084.6 18 45820572 + A330093E20Rik NNNATCCAGAGATTACAAGA NGG 2 0.6275 Tier III
13 NC_000069.6 3 58695878 - 4930593A02Rik NNNATCCAGAGATTGCAAAA NGG 2 0.4762 Tier III
14 NC_000076.6 10 39609080 - Gm16364 NNNATCCAAAGGTAGCAAGA NGG 2 0.4471 Tier III
15 NC_000075.6 9 90697592 - Gm30905 NNNATCCAGAGATTGCAGGA NGG 2 0.2667 Tier III
16 NC_000070.6 4 13003077 - Gm42256 NNNCTCCAGAGATTGCAAGA NGG 2 0.2353 Tier III
17 NC_000086.7 X 25078694 - Gm42218 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
18 NC_000086.7 X 27389558 + Gm42101 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
19 NC_000086.7 X 27687074 - Gm2101 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
20 NC_000086.7 X 27841326 + Gm42173 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
21 NC_000086.7 X 28188999 + Gm42175 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
22 NC_000086.7 X 28502303 + Gm42177 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
23 NC_000086.7 X 28849107 + Gm42179 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
24 NC_000086.7 X 29189250 + Gm42181 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
25 NC_000086.7 X 29732460 - Gm42098 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
26 NC_000086.7 X 30081840 - E330016L19Rik NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
27 NC_000086.7 X 30417592 - Gm7437 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
28 NC_000086.7 X 30743229 + Gm42182 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
29 NC_000086.7 X 34832161 - Gm42403 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
30 NC_000086.7 X 35172984 - Gm2309 NNNATCCAGAGATTGCCAGA NGG 2 0.1176 Tier III
31 NC_000072.6 6 68851769 + Igk NNNATCCAAAGAATTCAAGA NGG 2 0.0989 Tier III
32 NC_000072.6 6 68111519 + Igk NNNCTCCAAAGATTGCCAGA NGG 2 0.0623 Tier III
33 NC_000069.6 3 52707033 - Gm30235 NNNATCCAAAGATTGCAAAA NTG 2 0.0278 Tier III
34 NC_000072.6 6 6856779 - Dlx6os1 NNNATCCAAAAATTGCAAGA NGC 2 0.0222 Tier III
35 NC_000073.6 7 14713219 - Obox4-ps4 NNNATCCAAAGAATGCAAGA NGT 2 0.0112 Tier III
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Other clones with same target sequence:

(none)