Construct: sgRNA BRDN0001149081
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- TGGTTTCATTCGAATGACGG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- JAK1 (3716)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76394
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000001.11 |
1 |
64866939 |
- |
JAK1 |
NNNTTTCATTCGAATGACGG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000004.12 |
4 |
75873370 |
- |
PPEF2 |
NNNTTTCATTTGAATGACTG |
NGG |
2 |
0.2051 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000074.6 |
8 |
14486819 |
+ |
Dlgap2 |
NNNTTTCATTAGAATGACAG |
NGG |
2 |
0.5357 |
Tier II |
| 2 |
NC_000075.6 |
9 |
114843518 |
- |
Cmtm8 |
NNNTTTCATTCGAAGGATGG |
NGG |
2 |
0.0321 |
Tier II |
| 3 |
NC_000076.6 |
10 |
87073896 |
+ |
1700113H08Rik |
NNNTTTCAATCGAATGACGG |
NGT |
2 |
0.015 |
Tier II |
| 4 |
NC_000070.6 |
4 |
14285723 |
+ |
Gm2560 |
NNNTTTCATTCAAATGAAGG |
NGG |
2 |
0.5026 |
Tier III |
Other clones with same target sequence:
(none)
