Construct: sgRNA BRDN0001149265

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
TAGAACTCAAATTTACCCTG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
EPHA5 (2044)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
76677

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000004.12 4 65602152 - EPHA5 NNNAACTCAAATTTACCCTG NGG 0 1.0 Tier I
2 NC_000001.11 1 117090547 - TTF2 NNNAACTGAAATTTACGCTG NGG 2 0.0378 Tier I
3 NC_000015.10 15 53534486 + WDR72 NNNAACTTAAATTTACCCTA NGG 2 0.8203 Tier II
4 NC_000012.12 12 38694097 - CPNE8 NNNAACTCAAAAATACCCTG NGG 2 0.5538 Tier II
5 NC_000012.12 12 86673286 - MGAT4C NNNAACTCAAAGTTACCCTA NGG 2 0.4688 Tier II
6 NC_000003.12 3 197883398 + LRCH3 NNNAACTCATATTTACACTG NGG 2 0.4118 Tier II
7 NC_000009.12 9 99826292 - NR4A3 NNNAACTCAAATTTACTCTT NGG 2 0.3267 Tier II
8 NC_000006.12 6 149730568 + NUP43 NNNTACTCAAATTTACTCTG NGG 2 0.297 Tier II
9 NC_000011.10 11 17195084 + PIK3C2A NNNAACTTAATTTTACCCTG NGG 2 0.2692 Tier II
10 NC_000016.10 16 70953748 + HYDIN NNNAACTCAAATTCACCCTT NGG 2 0.2 Tier II
11 NC_000010.11 10 1337658 + ADARB2 NNNACCTCAACTTTACCCTG NGG 2 0.2 Tier II
12 NC_000004.12 4 138181780 + SLC7A11 NNNAACTCAAATTTACCTCG NGG 2 0.1773 Tier II
13 NC_000011.10 11 132868919 + OPCML NNNATCTCAAATTTACCCTC NGG 2 0.1558 Tier II
14 NC_000004.12 4 120872307 + PRDM5 NNNAACTCAAATTTCCACTG NGG 2 0.1273 Tier II
15 NC_000005.10 5 120527545 - PRR16 NNNAACTCAAAATTAGCCTG NGG 2 0.1231 Tier II
16 NC_000003.12 3 60122369 - FHIT NNNAACTCAAATGTTCCCTG NGG 2 0.0522 Tier II
17 NC_000024.10 Y 13362248 - UTY NNNAACTCAAATATACCCTG NGC 2 0.0154 Tier II
18 NC_000014.9 14 96368513 + GSKIP NNNAACTCAAATTAACCCTG NGT 2 0.01 Tier II
19 NC_000015.10 15 53534486 + LOC105370826 NNNAACTTAAATTTACCCTA NGG 2 0.8203 Tier III
20 NC_000007.14 7 10104754 - LOC105375149 NNNAAATGAAATTTACCCTG NGG 2 0.5969 Tier III
21 NC_000014.9 14 95397030 - LOC105370640 NNNAATTCAAATTTACCCTG NAG 2 0.2407 Tier III
22 NC_000001.11 1 146763717 - HYDIN2 NNNAACTCAAATTCACCCTT NGG 2 0.2 Tier III
23 NC_000001.11 1 31563425 - LOC124903917 NNNAACTCACATTTACTCTG NGG 2 0.1556 Tier III
24 NC_000006.12 6 146903544 + STXBP5-AS1 NNNAACTCAAATTGACCGTG NGG 2 0.0 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000076.6 10 110045867 - Nav3 NNNAACTAAAACTTACCCTG NGG 2 0.6158 Tier II
2 NC_000070.6 4 43580100 - Rgp1 NNNAACTTAACTTTACCCTG NGG 2 0.35 Tier II
3 NC_000076.6 10 8436621 + Ust NNNAACTCCAATTTACTCTG NGG 2 0.2667 Tier II
4 NC_000074.6 8 61900746 + Palld NNNATCTCAAGTTTACCCTG NGG 2 0.2364 Tier II
5 NC_000079.6 13 44978091 + Dtnbp1 NNNAACTCAAATTCACCCTT NGG 2 0.2 Tier II
6 NC_000077.6 11 80713027 - Myo1d NNNAACTAAAATTTACCCTG NAG 2 0.1685 Tier II
7 NC_000068.7 2 6030361 - Upf2 NNNAACTCAGATTTACCCTG NAG 2 0.144 Tier II
8 NC_000081.6 15 101710512 - Krt5 NNNAACCCAAATTTTCCCTG NGG 2 0.1375 Tier II
9 NC_000073.6 7 84064921 - Cemip NNNAACTCAAATTTAGCCTC NGG 2 0.0659 Tier II
10 NC_000074.6 8 14742737 - Dlgap2 NNNAACTCAAATTTTTCCTG NGG 2 0.0615 Tier II
11 NC_000079.6 13 93380762 + Homer1 NNNAACTCAGATTTACCCTG NGA 2 0.0386 Tier II
12 NC_000086.7 X 56559299 - Gm648 NNNAACTCAAATTTTGCCTG NGG 2 0.0308 Tier II
13 NC_000069.6 3 90345480 + Gatad2b NNNAACTCAGATTTACCCTG NTG 2 0.0216 Tier II
14 NC_000069.6 3 141769217 - Unc5c NNNAACTCAAATTTACCTTG NGT 2 0.0104 Tier II
15 NC_000084.6 18 24281927 - Galnt1 NNNAACTCAAATTTTCCCTG NGC 2 0.0044 Tier II
16 NC_000075.6 9 57104930 - Sin3a NNNAACTGAAATTGACCCTG NGG 2 0.0 Tier II
17 NC_000078.6 12 6087487 + Gm32576 NNNAACACAAAATTACCCTG NGG 2 0.7 Tier III
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Other clones with same target sequence:

(none)