Construct: sgRNA BRDN0001149533
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- CATGAGTATGCACAACGTAA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- CDK17 (5128)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76785
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000012.12 |
12 |
96297275 |
- |
CDK17 |
NNNGAGTATGCACAACGTAA |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000001.11 |
1 |
205526833 |
+ |
CDK18 |
NNNGAGCATGCACAACGTCA |
NGG |
2 |
0.1422 |
Tier I |
| 3 |
NC_000002.12 |
2 |
68199592 |
+ |
PPP3R1 |
NNNGAGTATGAACAAAGTAA |
NGG |
2 |
0.75 |
Tier II |
| 4 |
NC_000008.11 |
8 |
32710961 |
+ |
NRG1 |
NNNAAGTATGCACAACCTAA |
NGG |
2 |
0.2118 |
Tier II |
| 5 |
NC_000014.9 |
14 |
38871002 |
- |
LINC00639 |
NNNGAGTATGCACAACATAA |
NTG |
2 |
0.0364 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000073.6 |
7 |
29044027 |
+ |
Ryr1 |
NNNAAGCATGCACAACGTAA |
NGG |
2 |
0.6188 |
Tier II |
| 2 |
NC_000072.6 |
6 |
16858084 |
+ |
Tfec |
NNNGAGTATGCACAGTGTAA |
NGG |
2 |
0.2 |
Tier II |
| 3 |
NC_000073.6 |
7 |
68072071 |
- |
Igf1r |
NNNGAGTATGCACGACGTAA |
NCG |
2 |
0.05 |
Tier II |
Other clones with same target sequence:
(none)
