Construct: sgRNA BRDN0001162475
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- CGACGTCATCCGCCTAAAGC
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- PRKX (5613)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 78014
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000023.11 |
X |
3674668 |
- |
PRKX |
NNNCGTCATCCGCCTAAAGC |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000014.9 |
14 |
67807757 |
+ |
ZFYVE26 |
NNNCGTCATCCTCCTCAAGC |
NGG |
2 |
0.0 |
Tier I |
| 3 |
NC_000001.11 |
1 |
112748361 |
- |
NUTF2P4 |
NNNCTTCATCCGCCTTAAGC |
NGG |
2 |
0.0 |
Tier I |
| 4 |
NC_000001.11 |
1 |
5977443 |
+ |
NPHP4 |
NNNCGTCACCCACCTAAAGC |
NGG |
2 |
0.8615 |
Tier II |
| 5 |
NC_000002.12 |
2 |
54606829 |
- |
SPTBN1 |
NNNCGTCAGCCTCCTAAAGC |
NGG |
2 |
0.2381 |
Tier II |
| 6 |
NC_000012.12 |
12 |
13970348 |
+ |
GRIN2B |
NNNCTTCATCAGCCTAAAGC |
NGG |
2 |
0.225 |
Tier II |
| 7 |
NC_000024.10 |
Y |
7304036 |
+ |
PRKY |
NNNCGTCATCCGCCGGAAGC |
NGG |
2 |
0.0096 |
Tier III |
| 8 |
NC_000014.9 |
14 |
35820104 |
- |
NUTF2P2 |
NNNCTTCATCCGCCTTAAGC |
NGG |
2 |
0.0 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000082.6 |
16 |
89898167 |
+ |
Tiam1 |
NNNCGTCATCCCCGTAAAGC |
NGG |
2 |
0.0 |
Tier I |
| 2 |
NC_000068.7 |
2 |
93414831 |
- |
Gm13807 |
NNNCGTCATCTGGCTAAAGC |
NGG |
2 |
0.042 |
Tier III |
Other clones with same target sequence:
(none)
