Construct: sgRNA BRDN0001162566
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- CCGTATGTGAGTAGGCCTCG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- XYLB (9942)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77647
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000003.12 |
3 |
38366855 |
- |
XYLB |
NNNTATGTGAGTAGGCCTCG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000015.10 |
15 |
88471469 |
+ |
MRPS11 |
NNNTATGTGTGTAGGCCTAG |
NGG |
2 |
0.3782 |
Tier II |
| 3 |
NC_000011.10 |
11 |
133197969 |
- |
OPCML |
NNNTTTGTGAGTAGGCCTGG |
NGG |
2 |
0.0455 |
Tier II |
| 4 |
NC_000013.11 |
13 |
22927489 |
- |
LOC124903230 |
NNNTATGTGAATAGGCCTCG |
NGA |
2 |
0.0694 |
Tier III |
| 5 |
NC_000006.12 |
6 |
156004479 |
- |
LOC101928923 |
NNNTATGTAAGTAGGCCTCG |
NGC |
2 |
0.0143 |
Tier III |
| 6 |
NC_000006.12 |
6 |
156004479 |
- |
LOC124901442 |
NNNTATGTAAGTAGGCCTCG |
NGC |
2 |
0.0143 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000076.6 |
10 |
116886732 |
+ |
Myrfl |
NNNGATGTGAGGAGGCCTCG |
NGG |
2 |
0.3125 |
Tier II |
| 2 |
NC_000068.7 |
2 |
73563579 |
- |
Chrna1 |
NNNTATGTGTGTAGGCCTGG |
NGG |
2 |
0.1103 |
Tier II |
| 3 |
NC_000067.6 |
1 |
183216986 |
+ |
Disp1 |
NNNTATGTGAGTAGGCCCCG |
NGC |
2 |
0.0095 |
Tier II |
| 4 |
NC_000068.7 |
2 |
73563579 |
- |
Gm30940 |
NNNTATGTGTGTAGGCCTGG |
NGG |
2 |
0.1103 |
Tier III |
Other clones with same target sequence:
(none)
