Construct: sgRNA BRDN0001487100
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- GCAACTGTTTAAAGCGACGG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- DGKH (160851)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 78044
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000013.11 |
13 |
42166609 |
- |
DGKH |
NNNACTGTTTAAAGCGACGG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000010.11 |
10 |
98680479 |
+ |
HPSE2 |
NNNACTGTTTAAAGCAACAG |
NGG |
2 |
0.7143 |
Tier II |
| 3 |
NC_000007.14 |
7 |
30563204 |
+ |
GARS1-DT |
NNNACAGTTTAAAGCGACGG |
NCG |
2 |
0.0929 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000080.6 |
14 |
78618589 |
+ |
Dgkh |
NNNACTGTTTAAAGCGACGA |
NGG |
1 |
0.9375 |
Tier I |
| 2 |
NC_000085.6 |
19 |
56529392 |
+ |
Dclre1a |
NNNACTGTTCAAAGCGAGGG |
NGG |
2 |
0.0711 |
Tier II |
| 3 |
NC_000067.6 |
1 |
91203027 |
- |
Ramp1 |
NNNACTGTTTAAAGAGAGGG |
NGG |
2 |
0.0296 |
Tier II |
Other clones with same target sequence:
(none)
