Construct: shRNA TRCN0000006409

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_005233.3-1787s1c1
DNA Barcode:
GCCGCAAGTTTGAGTTTGAAA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
EPHA3 (2042)
Gene Description:
EPH receptor A3
Transcript:
RefSeq NM_005233.3 (NON-CURRENT)
Match location:
Position 1787 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000006409)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GCCGCAAGTTTGAGTTTGAAA
Hairpin Sequence:
5'-CCGG-GCCGCAAGTTTGAGTTTGAAA-CTCGAG-TTTCAAACTCAAACTTGCGGC-TTTTT-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCCGCAAGTTTGAGTTTGAAACTCGAGTTTCAAACTCAAACTTGCGGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCCGCAAGTTTGAGTTTGAAACTCGAGTTTCAAACTCAAACTTGCGGC-3'

Other clones with same target sequence:

  1. TRCN0000280005