Construct: shRNA TRCN0000019808

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_005080.2-312s1c1
DNA Barcode:
AGATCGAAAGAAGGCTCGAAT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
XBP1 (7494)
Gene Description:
X-box binding protein 1
Transcript:
RefSeq NM_005080.2 (NON-CURRENT)
Match location:
Position 312 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000019808)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
AGATCGAAAGAAGGCTCGAAT
Hairpin Sequence:
5'-CCGG-AGATCGAAAGAAGGCTCGAAT-CTCGAG-ATTCGAGCCTTCTTTCGATCT-TTTTT-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGAGATCGAAAGAAGGCTCGAATCTCGAGATTCGAGCCTTCTTTCGATCTTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAAGATCGAAAGAAGGCTCGAATCTCGAGATTCGAGCCTTCTTTCGATCT-3'

Other clones with same target sequence:

  1. TRCN0000277989