Construct: shRNA TRCN0000021429
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- XM_370946.2-2284s1c1
- DNA Barcode:
- CACACCTGTAATCCCAGCATT
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- LOC388226 (388226)
- Gene Description:
- similar to endoplasmic reticulum (ER) to nucleus signalling 2; inositol-requiring 1 (Yeast homologue); inositol-requiring 1 (yeast); inositol-requiring 1 beta (yeast)
- Transcript:
- RefSeq XM_370946.2 (NON-CURRENT)
- Match location:
- Position 2284 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000021429)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CACACCTGTAATCCCAGCATT
- Hairpin Sequence:
-
5'-CCGG-CACACCTGTAATCCCAGCATT-CTCGAG-AATGCTGGGATTACAGGTGTG-TTTTT-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCACACCTGTAATCCCAGCATTCTCGAGAATGCTGGGATTACAGGTGTGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACACACCTGTAATCCCAGCATTCTCGAGAATGCTGGGATTACAGGTGTG-3'
Other clones with same target sequence:
-
TRCN0000138998
-
TRCN0000344020
