Construct: shRNA TRCN0000022123
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_002518.2-2123s1c1
- DNA Barcode:
- CCAATGAGAAGCTCACAGCTA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- NPAS2 (4862)
- Gene Description:
- neuronal PAS domain protein 2
- Transcript:
- RefSeq NM_002518.2 (NON-CURRENT)
- Match location:
- Position 2123 (CDS)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000022123)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CCAATGAGAAGCTCACAGCTA
- Hairpin Sequence:
-
5'-CCGG-CCAATGAGAAGCTCACAGCTA-CTCGAG-TAGCTGTGAGCTTCTCATTGG-TTTTT-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCCAATGAGAAGCTCACAGCTACTCGAGTAGCTGTGAGCTTCTCATTGGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACCAATGAGAAGCTCACAGCTACTCGAGTAGCTGTGAGCTTCTCATTGG-3'
Other clones with same target sequence:
(none)
