Construct: shRNA TRCN0000036002
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- XM_378080.1-990s1c1
- DNA Barcode:
- CCTAGCATGGAAGGAAATTAA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- LOC402377 (402377)
- Gene Description:
- UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 pseudogene
- Transcript:
- RefSeq XM_378080.1 (NON-CURRENT)
- Match location:
- Position 990 (CDS)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000036002)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CCTAGCATGGAAGGAAATTAA
- Hairpin Sequence:
-
5'-CCGG-CCTAGCATGGAAGGAAATTAA-CTCGAG-TTAATTTCCTTCCATGCTAGG-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCCTAGCATGGAAGGAAATTAACTCGAGTTAATTTCCTTCCATGCTAGGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACCTAGCATGGAAGGAAATTAACTCGAGTTAATTTCCTTCCATGCTAGG-3'
Other clones with same target sequence:
(none)
