Construct: shRNA TRCN0000048852

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_002601.1-402s1c1
DNA Barcode:
GCAATGCCTAGAAGAATGGTT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
PDE6D (5147)
Gene Description:
phosphodiesterase 6D
Transcript:
RefSeq NM_002601.1 (NON-CURRENT)
Match location:
Position 402 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000048852)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GCAATGCCTAGAAGAATGGTT
Hairpin Sequence:
5'-CCGG-GCAATGCCTAGAAGAATGGTT-CTCGAG-AACCATTCTTCTAGGCATTGC-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCAATGCCTAGAAGAATGGTTCTCGAGAACCATTCTTCTAGGCATTGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCAATGCCTAGAAGAATGGTTCTCGAGAACCATTCTTCTAGGCATTGC-3'

Other clones with same target sequence:

  1. TRCN0000290576