Construct: shRNA TRCN0000050529

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_001644.2-325s1c1
DNA Barcode:
CCAGGCTATTAGAGAGTTTCT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
APOBEC1 (339)
Gene Description:
apolipoprotein B mRNA editing enzyme catalytic subunit 1
Transcript:
RefSeq NM_001644.2 (NON-CURRENT)
Match location:
Position 325 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000050529)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCAGGCTATTAGAGAGTTTCT
Hairpin Sequence:
5'-CCGG-CCAGGCTATTAGAGAGTTTCT-CTCGAG-AGAAACTCTCTAATAGCCTGG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCAGGCTATTAGAGAGTTTCTCTCGAGAGAAACTCTCTAATAGCCTGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCAGGCTATTAGAGAGTTTCTCTCGAGAGAAACTCTCTAATAGCCTGG-3'

Other clones with same target sequence:

(none)