Construct: shRNA TRCN0000053751

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_018916.3-1158s1c1
DNA Barcode:
CCTGGGAAATCTGCCATTTAA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
PCDHGA3 (56112)
Gene Description:
protocadherin gamma subfamily A, 3
Transcript:
RefSeq NM_018916.3 (NON-CURRENT)
Match location:
Position 1158 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000053751)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCTGGGAAATCTGCCATTTAA
Hairpin Sequence:
5'-CCGG-CCTGGGAAATCTGCCATTTAA-CTCGAG-TTAAATGGCAGATTTCCCAGG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCTGGGAAATCTGCCATTTAACTCGAGTTAAATGGCAGATTTCCCAGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCTGGGAAATCTGCCATTTAACTCGAGTTAAATGGCAGATTTCCCAGG-3'

Other clones with same target sequence:

(none)