Construct: shRNA TRCN0000054258

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_014944.2-1320s1c1
DNA Barcode:
CCAGATTTGCAGCTACGAAAT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
CLSTN1 (22883)
Gene Description:
calsyntenin 1
Transcript:
RefSeq NM_014944.2 (NON-CURRENT)
Match location:
Position 1320 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000054258)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCAGATTTGCAGCTACGAAAT
Hairpin Sequence:
5'-CCGG-CCAGATTTGCAGCTACGAAAT-CTCGAG-ATTTCGTAGCTGCAAATCTGG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCAGATTTGCAGCTACGAAATCTCGAGATTTCGTAGCTGCAAATCTGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCAGATTTGCAGCTACGAAATCTCGAGATTTCGTAGCTGCAAATCTGG-3'

Other clones with same target sequence:

  1. TRCN0000292012