Construct: shRNA TRCN0000055596

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_018898.3-1984s1c1
DNA Barcode:
CGTCTGACTCTAGTCTCTTTA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
PCDHAC1 (56135)
Gene Description:
protocadherin alpha subfamily C, 1
Transcript:
RefSeq NM_018898.3 (CURRENT)
Match location:
Position 1984 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000055596)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CGTCTGACTCTAGTCTCTTTA
Hairpin Sequence:
5'-CCGG-CGTCTGACTCTAGTCTCTTTA-CTCGAG-TAAAGAGACTAGAGTCAGACG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCGTCTGACTCTAGTCTCTTTACTCGAGTAAAGAGACTAGAGTCAGACGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACGTCTGACTCTAGTCTCTTTACTCGAGTAAAGAGACTAGAGTCAGACG-3'

Other clones with same target sequence:

  1. TRCN0000174107