Construct: shRNA TRCN0000066805

Construct Description:

Construct Type:
shRNA
Other Identifiers:
XM_207061.3-507s1c1
DNA Barcode:
CAGATACCTGAAGAACGGGAA

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
H2-K1 (14972)
Gene Description:
histocompatibility 2, K1, K region
Transcript:
RefSeq XM_207061.3 (NON-CURRENT)
Match location:
Position 507 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000066805)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CAGATACCTGAAGAACGGGAA
Hairpin Sequence:
5'-CCGG-CAGATACCTGAAGAACGGGAA-CTCGAG-TTCCCGTTCTTCAGGTATCTG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCAGATACCTGAAGAACGGGAACTCGAGTTCCCGTTCTTCAGGTATCTGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACAGATACCTGAAGAACGGGAACTCGAGTTCCCGTTCTTCAGGTATCTG-3'

Other clones with same target sequence:

  1. TRCN0000318013