Construct: shRNA TRCN0000073337

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_033421.2-836s1c1
DNA Barcode:
CCTCACCTGTACTGGCCTCTA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
SNX21 (90203)
Gene Description:
sorting nexin family member 21
Transcript:
RefSeq NM_033421.2 (NON-CURRENT)
Match location:
Position 836 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000073337)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCTCACCTGTACTGGCCTCTA
Hairpin Sequence:
5'-CCGG-CCTCACCTGTACTGGCCTCTA-CTCGAG-TAGAGGCCAGTACAGGTGAGG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCTCACCTGTACTGGCCTCTACTCGAGTAGAGGCCAGTACAGGTGAGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCTCACCTGTACTGGCCTCTACTCGAGTAGAGGCCAGTACAGGTGAGG-3'

Other clones with same target sequence:

(none)