Construct: shRNA TRCN0000076474
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_177161.3-1285s1c1
- DNA Barcode:
- CCAGGTGGTGAACTATGGAAT
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- P4ha3 (320452)
- Gene Description:
- procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III
- Transcript:
- RefSeq NM_177161.3 (NON-CURRENT)
- Match location:
- Position 1285 (CDS)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000076474)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CCAGGTGGTGAACTATGGAAT
- Hairpin Sequence:
-
5'-CCGG-CCAGGTGGTGAACTATGGAAT-CTCGAG-ATTCCATAGTTCACCACCTGG-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCCAGGTGGTGAACTATGGAATCTCGAGATTCCATAGTTCACCACCTGGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACCAGGTGGTGAACTATGGAATCTCGAGATTCCATAGTTCACCACCTGG-3'
Other clones with same target sequence:
(none)
