Construct: shRNA TRCN0000083689

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_001852.3-811s1c1
DNA Barcode:
CCCTCATGGATATAAAGGCAT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
COL9A2 (1298)
Gene Description:
collagen type IX alpha 2 chain
Transcript:
RefSeq NM_001852.3 (NON-CURRENT)
Match location:
Position 811 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000083689)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCCTCATGGATATAAAGGCAT
Hairpin Sequence:
5'-CCGG-CCCTCATGGATATAAAGGCAT-CTCGAG-ATGCCTTTATATCCATGAGGG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCCTCATGGATATAAAGGCATCTCGAGATGCCTTTATATCCATGAGGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCCTCATGGATATAAAGGCATCTCGAGATGCCTTTATATCCATGAGGG-3'

Other clones with same target sequence:

(none)