Construct: shRNA TRCN0000084143

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_005709.1-2080s1c1
DNA Barcode:
GACTCCTTCCTTGAACCCTAA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
USH1C (10083)
Gene Description:
USH1 protein network component harmonin
Transcript:
RefSeq NM_005709.1 (NON-CURRENT)
Match location:
Position 2080 (3UTR)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000084143)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GACTCCTTCCTTGAACCCTAA
Hairpin Sequence:
5'-CCGG-GACTCCTTCCTTGAACCCTAA-CTCGAG-TTAGGGTTCAAGGAAGGAGTC-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGACTCCTTCCTTGAACCCTAACTCGAGTTAGGGTTCAAGGAAGGAGTCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGACTCCTTCCTTGAACCCTAACTCGAGTTAGGGTTCAAGGAAGGAGTC-3'

Other clones with same target sequence:

(none)