Construct: shRNA TRCN0000085193

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_144809.1-1054s1c1
DNA Barcode:
GCTGATTACCAAGGGAAGAAA

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Prdm9 (213389)
Gene Description:
PR domain containing 9
Transcript:
RefSeq NM_144809.1 (NON-CURRENT)
Match location:
Position 1054 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000085193)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GCTGATTACCAAGGGAAGAAA
Hairpin Sequence:
5'-CCGG-GCTGATTACCAAGGGAAGAAA-CTCGAG-TTTCTTCCCTTGGTAATCAGC-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCTGATTACCAAGGGAAGAAACTCGAGTTTCTTCCCTTGGTAATCAGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCTGATTACCAAGGGAAGAAACTCGAGTTTCTTCCCTTGGTAATCAGC-3'

Other clones with same target sequence:

(none)