Construct: shRNA TRCN0000085933
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_177338.3-2582s1c1
- DNA Barcode:
- CCCAGAGTCATTAGGACTCTT
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- Hmbox1 (219150)
- Gene Description:
- homeobox containing 1
- Transcript:
- RefSeq NM_177338.3 (NON-CURRENT)
- Match location:
- Position 2582 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000085933)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CCCAGAGTCATTAGGACTCTT
- Hairpin Sequence:
-
5'-CCGG-CCCAGAGTCATTAGGACTCTT-CTCGAG-AAGAGTCCTAATGACTCTGGG-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCCCAGAGTCATTAGGACTCTTCTCGAGAAGAGTCCTAATGACTCTGGGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACCCAGAGTCATTAGGACTCTTCTCGAGAAGAGTCCTAATGACTCTGGG-3'
Other clones with same target sequence:
(none)
