Construct: shRNA TRCN0000085937

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_177338.3-1162s1c1
DNA Barcode:
GCCTAGCTGTCATGGAAAGTT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Hmbox1 (219150)
Gene Description:
homeobox containing 1
Transcript:
RefSeq NM_177338.3 (NON-CURRENT)
Match location:
Position 1162 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000085937)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GCCTAGCTGTCATGGAAAGTT
Hairpin Sequence:
5'-CCGG-GCCTAGCTGTCATGGAAAGTT-CTCGAG-AACTTTCCATGACAGCTAGGC-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCCTAGCTGTCATGGAAAGTTCTCGAGAACTTTCCATGACAGCTAGGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCCTAGCTGTCATGGAAAGTTCTCGAGAACTTTCCATGACAGCTAGGC-3'

Other clones with same target sequence:

  1. TRCN0000301801