Construct: shRNA TRCN0000086762

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_172473.1-2336s1c1
DNA Barcode:
GCTATGGAAGAGGTGCCTTTA

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Hace1 (209462)
Gene Description:
HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1
Transcript:
RefSeq NM_172473.1 (NON-CURRENT)
Match location:
Position 2336 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000086762)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GCTATGGAAGAGGTGCCTTTA
Hairpin Sequence:
5'-CCGG-GCTATGGAAGAGGTGCCTTTA-CTCGAG-TAAAGGCACCTCTTCCATAGC-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCTATGGAAGAGGTGCCTTTACTCGAGTAAAGGCACCTCTTCCATAGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCTATGGAAGAGGTGCCTTTACTCGAGTAAAGGCACCTCTTCCATAGC-3'

Other clones with same target sequence:

  1. TRCN0000332539