Construct: shRNA TRCN0000090540
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- XM_282816.4-2038s1c1
- DNA Barcode:
- CGCTTTGATGATGGAATCAAA
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- Gm5117 (330731)
- Gene Description:
- predicted gene 5117; trimethylguanosine synthase homolog pseudogene
- Transcript:
- RefSeq XM_282816.4 (NON-CURRENT)
- Match location:
- Position 2038 (CDS)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000090540)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CGCTTTGATGATGGAATCAAA
- Hairpin Sequence:
-
5'-CCGG-CGCTTTGATGATGGAATCAAA-CTCGAG-TTTGATTCCATCATCAAAGCG-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCGCTTTGATGATGGAATCAAACTCGAGTTTGATTCCATCATCAAAGCGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACGCTTTGATGATGGAATCAAACTCGAGTTTGATTCCATCATCAAAGCG-3'
Other clones with same target sequence:
(none)
