Construct: shRNA TRCN0000090596
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- XM_355324.2-339s1c1
- DNA Barcode:
- GCACTTTGCATCTGAAACCAT
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- LOC381358 (381358)
- Gene Description:
- similar to Spectrin alpha chain, brain (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin) (Fodrin alpha chain)
- Transcript:
- RefSeq XM_355324.2 (NON-CURRENT)
- Match location:
- Position 339 (CDS)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000090596)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- GCACTTTGCATCTGAAACCAT
- Hairpin Sequence:
-
5'-CCGG-GCACTTTGCATCTGAAACCAT-CTCGAG-ATGGTTTCAGATGCAAAGTGC-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGGCACTTTGCATCTGAAACCATCTCGAGATGGTTTCAGATGCAAAGTGCTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAAGCACTTTGCATCTGAAACCATCTCGAGATGGTTTCAGATGCAAAGTGC-3'
Other clones with same target sequence:
(none)
