Construct: shRNA TRCN0000101398

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_172613.2-2381s1c1
DNA Barcode:
CGGCATCTATCTCTTGGAAAT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Atp13a4 (224079)
Gene Description:
ATPase type 13A4
Transcript:
RefSeq NM_172613.2 (NON-CURRENT)
Match location:
Position 2381 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000101398)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CGGCATCTATCTCTTGGAAAT
Hairpin Sequence:
5'-CCGG-CGGCATCTATCTCTTGGAAAT-CTCGAG-ATTTCCAAGAGATAGATGCCG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCGGCATCTATCTCTTGGAAATCTCGAGATTTCCAAGAGATAGATGCCGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACGGCATCTATCTCTTGGAAATCTCGAGATTTCCAAGAGATAGATGCCG-3'

Other clones with same target sequence:

(none)