Construct: shRNA TRCN0000101519

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_016920.1-439s1c1
DNA Barcode:
GAGGCCAATTTCGAGAAGATT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Atp6v0a1 (11975)
Gene Description:
ATPase, H+ transporting, lysosomal V0 subunit A1
Transcript:
RefSeq NM_016920.1 (NON-CURRENT)
Match location:
Position 439 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000101519)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GAGGCCAATTTCGAGAAGATT
Hairpin Sequence:
5'-CCGG-GAGGCCAATTTCGAGAAGATT-CTCGAG-AATCTTCTCGAAATTGGCCTC-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGAGGCCAATTTCGAGAAGATTCTCGAGAATCTTCTCGAAATTGGCCTCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGAGGCCAATTTCGAGAAGATTCTCGAGAATCTTCTCGAAATTGGCCTC-3'

Other clones with same target sequence:

(none)