Construct: shRNA TRCN0000103091

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_199055.1-1207s1c1
DNA Barcode:
GCCGAAAGACAGCTCATCTAT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Chst9 (71367)
Gene Description:
carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
Transcript:
RefSeq NM_199055.1 (NON-CURRENT)
Match location:
Position 1207 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000103091)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GCCGAAAGACAGCTCATCTAT
Hairpin Sequence:
5'-CCGG-GCCGAAAGACAGCTCATCTAT-CTCGAG-ATAGATGAGCTGTCTTTCGGC-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCCGAAAGACAGCTCATCTATCTCGAGATAGATGAGCTGTCTTTCGGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCCGAAAGACAGCTCATCTATCTCGAGATAGATGAGCTGTCTTTCGGC-3'

Other clones with same target sequence:

(none)