Construct: shRNA TRCN0000108320

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_001856.2-5090s1c1
DNA Barcode:
CGTTGGGAATAAATGGCCAAA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
COL16A1 (1307)
Gene Description:
collagen type XVI alpha 1 chain
Transcript:
RefSeq NM_001856.2 (NON-CURRENT)
Match location:
Position 5090 (3UTR)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000108320)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CGTTGGGAATAAATGGCCAAA
Hairpin Sequence:
5'-CCGG-CGTTGGGAATAAATGGCCAAA-CTCGAG-TTTGGCCATTTATTCCCAACG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCGTTGGGAATAAATGGCCAAACTCGAGTTTGGCCATTTATTCCCAACGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACGTTGGGAATAAATGGCCAAACTCGAGTTTGGCCATTTATTCCCAACG-3'

Other clones with same target sequence:

  1. TRCN0000299992