Construct: shRNA TRCN0000109945
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_029741.1-3534s1c1
- DNA Barcode:
- CCTGGACCAAACCATAAGAAA
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- Ppfia3 (76787)
- Gene Description:
- protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
- Transcript:
- RefSeq NM_029741.1 (NON-CURRENT)
- Match location:
- Position 3534 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000109945)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CCTGGACCAAACCATAAGAAA
- Hairpin Sequence:
-
5'-CCGG-CCTGGACCAAACCATAAGAAA-CTCGAG-TTTCTTATGGTTTGGTCCAGG-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCCTGGACCAAACCATAAGAAACTCGAGTTTCTTATGGTTTGGTCCAGGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACCTGGACCAAACCATAAGAAACTCGAGTTTCTTATGGTTTGGTCCAGG-3'
Other clones with same target sequence:
(none)
