Construct: shRNA TRCN0000110335
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_172948.3-3360s1c1
- DNA Barcode:
- CCTATTCACCAGAGGTCTCAA
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- Mgat5b (268510)
- Gene Description:
- mannoside acetylglucosaminyltransferase 5, isoenzyme B
- Transcript:
- RefSeq NM_172948.3 (CURRENT)
- Match location:
- Position 3360 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000110335)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CCTATTCACCAGAGGTCTCAA
- Hairpin Sequence:
-
5'-CCGG-CCTATTCACCAGAGGTCTCAA-CTCGAG-TTGAGACCTCTGGTGAATAGG-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCCTATTCACCAGAGGTCTCAACTCGAGTTGAGACCTCTGGTGAATAGGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACCTATTCACCAGAGGTCTCAACTCGAGTTGAGACCTCTGGTGAATAGG-3'
Other clones with same target sequence:
(none)
