Construct: shRNA TRCN0000115809

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_173357.2-360s1c1
DNA Barcode:
CAGAGGAATGATTCTGATAAT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
SSX6P (280657)
Gene Description:
SSX family member 6, pseudogene
Transcript:
RefSeq NM_173357.2 (NON-CURRENT)
Match location:
Position 360 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000115809)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CAGAGGAATGATTCTGATAAT
Hairpin Sequence:
5'-CCGG-CAGAGGAATGATTCTGATAAT-CTCGAG-ATTATCAGAATCATTCCTCTG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCAGAGGAATGATTCTGATAATCTCGAGATTATCAGAATCATTCCTCTGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACAGAGGAATGATTCTGATAATCTCGAGATTATCAGAATCATTCCTCTG-3'

Other clones with same target sequence:

(none)