Construct: shRNA TRCN0000126138

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_009881.1-1638s1c1
DNA Barcode:
GCTTGGTTTCAAACACCCTAT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Cdyl (12593)
Gene Description:
chromodomain protein, Y chromosome-like
Transcript:
RefSeq NM_009881.1 (NON-CURRENT)
Match location:
Position 1638 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000126138)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GCTTGGTTTCAAACACCCTAT
Hairpin Sequence:
5'-CCGG-GCTTGGTTTCAAACACCCTAT-CTCGAG-ATAGGGTGTTTGAAACCAAGC-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCTTGGTTTCAAACACCCTATCTCGAGATAGGGTGTTTGAAACCAAGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCTTGGTTTCAAACACCCTATCTCGAGATAGGGTGTTTGAAACCAAGC-3'

Other clones with same target sequence:

  1. TRCN0000308353