Construct: shRNA TRCN0000155406

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_001012976.1-1056s1c1
DNA Barcode:
CCTCAGAAATAACACCGCATA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
LOC340211 (340211)
Gene Description:
similar to LINE-1 reverse transcriptase homolog
Transcript:
RefSeq NM_001012976.1 (NON-CURRENT)
Match location:
Position 1056 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000155406)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCTCAGAAATAACACCGCATA
Hairpin Sequence:
5'-CCGG-CCTCAGAAATAACACCGCATA-CTCGAG-TATGCGGTGTTATTTCTGAGG-TTTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCTCAGAAATAACACCGCATACTCGAGTATGCGGTGTTATTTCTGAGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCTCAGAAATAACACCGCATACTCGAGTATGCGGTGTTATTTCTGAGG-3'

Other clones with same target sequence:

(none)