Construct: shRNA TRCN0000166560
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_207497.1-412s1c1
- DNA Barcode:
- CCTCCGAAAGTGCTAGGATTA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- LINC00336 (401253)
- Gene Description:
- long intergenic non-protein coding RNA 336
- Transcript:
- RefSeq NM_207497.1 (NON-CURRENT)
- Match location:
- Position 412 (CDS)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000166560)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CCTCCGAAAGTGCTAGGATTA
- Hairpin Sequence:
-
5'-CCGG-CCTCCGAAAGTGCTAGGATTA-CTCGAG-TAATCCTAGCACTTTCGGAGG-TTTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCCTCCGAAAGTGCTAGGATTACTCGAGTAATCCTAGCACTTTCGGAGGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACCTCCGAAAGTGCTAGGATTACTCGAGTAATCCTAGCACTTTCGGAGG-3'
Other clones with same target sequence:
(none)
