Construct: shRNA TRCN0000173016
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_001013656.1-2784s1c1
- DNA Barcode:
- CCCTAGTGATCCACTAGCAAA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- LOC389936 (389936)
- Gene Description:
- similar to proline-rich proteoglycan 2
- Transcript:
- RefSeq NM_001013656.1 (NON-CURRENT)
- Match location:
- Position 2784 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO.1
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000173016)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- CCCTAGTGATCCACTAGCAAA
- Hairpin Sequence:
-
5'-CCGG-CCCTAGTGATCCACTAGCAAA-CTCGAG-TTTGCTAGTGGATCACTAGGG-TTTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGCCCTAGTGATCCACTAGCAAACTCGAGTTTGCTAGTGGATCACTAGGGTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAACCCTAGTGATCCACTAGCAAACTCGAGTTTGCTAGTGGATCACTAGGG-3'
Other clones with same target sequence:
(none)
